Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20070 and RS_RS20075 are separated by 4 nucleotides RS_RS20075 and RS_RS20080 overlap by 4 nucleotides RS_RS20080 and RS_RS20085 overlap by 4 nucleotides
RS_RS20070: RS_RS20070 - GTP-binding protein, at 748,347 to 749,450
_RS20070
RS_RS20075: RS_RS20075 - bifunctional precorrin-3 methyltransferase/precorrin-6x reductase, at 749,455 to 751,014
_RS20075
RS_RS20080: RS_RS20080 - cobalamin biosynthesis protein CbiG, at 751,011 to 751,775
_RS20080
RS_RS20085: RS_RS20085 - precorrin-4 C(11)-methyltransferase, at 751,772 to 752,587
_RS20085
Position (kb) 749
750
751
752 Strain fitness (log2 ratio) -2
-1
0
1 at 748.775 kb on - strand, within RS_RS20070 at 748.775 kb on - strand, within RS_RS20070 at 749.236 kb on + strand, within RS_RS20070 at 749.535 kb on - strand at 749.954 kb on + strand, within RS_RS20075 at 750.011 kb on + strand, within RS_RS20075 at 750.308 kb on + strand, within RS_RS20075 at 750.308 kb on + strand, within RS_RS20075 at 750.308 kb on + strand, within RS_RS20075 at 750.309 kb on - strand, within RS_RS20075 at 750.309 kb on - strand, within RS_RS20075 at 750.309 kb on - strand, within RS_RS20075 at 750.498 kb on - strand, within RS_RS20075 at 750.534 kb on - strand, within RS_RS20075 at 750.534 kb on - strand, within RS_RS20075 at 750.534 kb on - strand, within RS_RS20075 at 750.534 kb on - strand, within RS_RS20075 at 750.756 kb on - strand, within RS_RS20075 at 750.756 kb on - strand, within RS_RS20075 at 750.756 kb on - strand, within RS_RS20075 at 750.756 kb on - strand, within RS_RS20075 at 750.902 kb on + strand at 750.902 kb on + strand at 750.903 kb on - strand at 750.903 kb on - strand at 750.903 kb on - strand at 750.912 kb on - strand at 750.998 kb on + strand at 750.998 kb on + strand at 750.998 kb on + strand at 750.998 kb on + strand at 750.999 kb on - strand at 750.999 kb on - strand at 751.462 kb on + strand, within RS_RS20080 at 751.582 kb on + strand, within RS_RS20080 at 751.583 kb on - strand, within RS_RS20080 at 751.690 kb on + strand, within RS_RS20080 at 751.690 kb on + strand, within RS_RS20080 at 751.690 kb on + strand, within RS_RS20080 at 751.691 kb on - strand, within RS_RS20080 at 751.691 kb on - strand, within RS_RS20080 at 751.691 kb on - strand, within RS_RS20080 at 751.691 kb on - strand, within RS_RS20080 at 751.870 kb on - strand, within RS_RS20085 at 751.870 kb on - strand, within RS_RS20085
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 748,775 - RS_RS20070 0.39 -0.7 748,775 - RS_RS20070 0.39 +0.0 749,236 + RS_RS20070 0.81 -0.3 749,535 - -0.9 749,954 + RS_RS20075 0.32 -0.7 750,011 + RS_RS20075 0.36 -0.7 750,308 + RS_RS20075 0.55 -0.6 750,308 + RS_RS20075 0.55 -0.5 750,308 + RS_RS20075 0.55 -0.5 750,309 - RS_RS20075 0.55 -0.8 750,309 - RS_RS20075 0.55 -0.3 750,309 - RS_RS20075 0.55 -0.1 750,498 - RS_RS20075 0.67 -1.9 750,534 - RS_RS20075 0.69 -1.0 750,534 - RS_RS20075 0.69 -0.1 750,534 - RS_RS20075 0.69 -0.6 750,534 - RS_RS20075 0.69 -0.5 750,756 - RS_RS20075 0.83 -1.4 750,756 - RS_RS20075 0.83 +0.1 750,756 - RS_RS20075 0.83 -0.8 750,756 - RS_RS20075 0.83 -0.2 750,902 + +0.4 750,902 + -1.0 750,903 - -0.7 750,903 - -1.1 750,903 - -0.6 750,912 - -1.0 750,998 + -0.7 750,998 + -0.6 750,998 + -2.2 750,998 + -0.9 750,999 - -0.8 750,999 - -0.2 751,462 + RS_RS20080 0.59 +0.6 751,582 + RS_RS20080 0.75 -1.6 751,583 - RS_RS20080 0.75 -0.8 751,690 + RS_RS20080 0.89 -0.7 751,690 + RS_RS20080 0.89 -0.2 751,690 + RS_RS20080 0.89 -0.8 751,691 - RS_RS20080 0.89 -0.9 751,691 - RS_RS20080 0.89 -0.4 751,691 - RS_RS20080 0.89 -0.9 751,691 - RS_RS20080 0.89 -0.8 751,870 - RS_RS20085 0.12 -0.9 751,870 - RS_RS20085 0.12 -1.0
Or see this region's nucleotide sequence