Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06855 and RS_RS06860 overlap by 4 nucleotides RS_RS06860 and RS_RS06865 are separated by 70 nucleotides RS_RS06865 and RS_RS06870 are separated by 120 nucleotides
RS_RS06855: RS_RS06855 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 1,456,302 to 1,457,033
_RS06855
RS_RS06860: RS_RS06860 - ribosomal-protein-alanine N-acetyltransferase, at 1,457,030 to 1,457,563
_RS06860
RS_RS06865: RS_RS06865 - uracil-DNA glycosylase, at 1,457,634 to 1,458,512
_RS06865
RS_RS06870: RS_RS06870 - lysophospholipid transporter LplT, at 1,458,633 to 1,459,949
_RS06870
Position (kb) 1457
1458
1459 Strain fitness (log2 ratio) -2
-1
0
1 at 1457.480 kb on + strand, within RS_RS06860 at 1458.673 kb on + strand at 1458.790 kb on + strand, within RS_RS06870 at 1458.950 kb on - strand, within RS_RS06870 at 1458.964 kb on + strand, within RS_RS06870 at 1458.965 kb on - strand, within RS_RS06870 at 1458.965 kb on - strand, within RS_RS06870 at 1459.025 kb on - strand, within RS_RS06870 at 1459.025 kb on - strand, within RS_RS06870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,457,480 + RS_RS06860 0.84 -0.5 1,458,673 + +0.9 1,458,790 + RS_RS06870 0.12 -0.9 1,458,950 - RS_RS06870 0.24 +0.0 1,458,964 + RS_RS06870 0.25 -0.6 1,458,965 - RS_RS06870 0.25 -1.5 1,458,965 - RS_RS06870 0.25 -2.1 1,459,025 - RS_RS06870 0.30 -2.5 1,459,025 - RS_RS06870 0.30 -0.7
Or see this region's nucleotide sequence