Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04900 and RS_RS04905 are separated by 7 nucleotides RS_RS04905 and RS_RS04910 are separated by 85 nucleotides RS_RS04910 and RS_RS04915 are separated by 11 nucleotides RS_RS04915 and RS_RS04920 are separated by 182 nucleotides
RS_RS04900: RS_RS04900 - molecular chaperone HtpG, at 1,041,349 to 1,043,271
_RS04900
RS_RS04905: RS_RS04905 - DNA-deoxyinosine glycosylase, at 1,043,279 to 1,043,779
_RS04905
RS_RS04910: RS_RS04910 - glutathione S-transferase, at 1,043,865 to 1,044,947
_RS04910
RS_RS04915: RS_RS04915 - transcriptional regulator, at 1,044,959 to 1,045,324
_RS04915
RS_RS04920: RS_RS04920 - membrane protein, at 1,045,507 to 1,046,265
_RS04920
Position (kb) 1043
1044
1045 Strain fitness (log2 ratio) -1
0
1 at 1043.240 kb on - strand at 1043.393 kb on + strand, within RS_RS04905 at 1043.393 kb on + strand, within RS_RS04905 at 1043.396 kb on + strand, within RS_RS04905 at 1043.396 kb on + strand, within RS_RS04905 at 1043.396 kb on + strand, within RS_RS04905 at 1043.397 kb on - strand, within RS_RS04905 at 1043.397 kb on - strand, within RS_RS04905 at 1043.397 kb on - strand, within RS_RS04905 at 1043.468 kb on + strand, within RS_RS04905 at 1043.983 kb on + strand, within RS_RS04910 at 1043.983 kb on + strand, within RS_RS04910 at 1044.041 kb on - strand, within RS_RS04910 at 1044.056 kb on - strand, within RS_RS04910 at 1044.154 kb on + strand, within RS_RS04910 at 1044.154 kb on + strand, within RS_RS04910 at 1044.154 kb on + strand, within RS_RS04910 at 1044.155 kb on - strand, within RS_RS04910 at 1044.166 kb on + strand, within RS_RS04910 at 1044.167 kb on - strand, within RS_RS04910 at 1044.289 kb on + strand, within RS_RS04910 at 1044.289 kb on + strand, within RS_RS04910 at 1044.290 kb on - strand, within RS_RS04910 at 1044.290 kb on - strand, within RS_RS04910 at 1044.290 kb on - strand, within RS_RS04910 at 1044.454 kb on + strand, within RS_RS04910 at 1044.454 kb on + strand, within RS_RS04910 at 1044.455 kb on - strand, within RS_RS04910 at 1044.475 kb on + strand, within RS_RS04910 at 1044.695 kb on - strand, within RS_RS04910 at 1044.933 kb on - strand at 1045.442 kb on - strand at 1045.442 kb on - strand at 1045.636 kb on + strand, within RS_RS04920 at 1045.637 kb on - strand, within RS_RS04920 at 1045.651 kb on + strand, within RS_RS04920 at 1045.652 kb on - strand, within RS_RS04920 at 1045.652 kb on - strand, within RS_RS04920
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,043,240 - -1.1 1,043,393 + RS_RS04905 0.23 +0.9 1,043,393 + RS_RS04905 0.23 -0.2 1,043,396 + RS_RS04905 0.23 +0.1 1,043,396 + RS_RS04905 0.23 -0.4 1,043,396 + RS_RS04905 0.23 -0.8 1,043,397 - RS_RS04905 0.24 -0.2 1,043,397 - RS_RS04905 0.24 -0.3 1,043,397 - RS_RS04905 0.24 +0.5 1,043,468 + RS_RS04905 0.38 +0.5 1,043,983 + RS_RS04910 0.11 +0.2 1,043,983 + RS_RS04910 0.11 +1.0 1,044,041 - RS_RS04910 0.16 +0.5 1,044,056 - RS_RS04910 0.18 -0.0 1,044,154 + RS_RS04910 0.27 -0.4 1,044,154 + RS_RS04910 0.27 +0.2 1,044,154 + RS_RS04910 0.27 -0.2 1,044,155 - RS_RS04910 0.27 -0.9 1,044,166 + RS_RS04910 0.28 -0.1 1,044,167 - RS_RS04910 0.28 -0.6 1,044,289 + RS_RS04910 0.39 -0.4 1,044,289 + RS_RS04910 0.39 -0.5 1,044,290 - RS_RS04910 0.39 -0.0 1,044,290 - RS_RS04910 0.39 -0.5 1,044,290 - RS_RS04910 0.39 -1.4 1,044,454 + RS_RS04910 0.54 -0.9 1,044,454 + RS_RS04910 0.54 -0.8 1,044,455 - RS_RS04910 0.54 -0.2 1,044,475 + RS_RS04910 0.56 +0.5 1,044,695 - RS_RS04910 0.77 +0.1 1,044,933 - +0.3 1,045,442 - -0.7 1,045,442 - -0.1 1,045,636 + RS_RS04920 0.17 +0.6 1,045,637 - RS_RS04920 0.17 +0.3 1,045,651 + RS_RS04920 0.19 -0.6 1,045,652 - RS_RS04920 0.19 +0.1 1,045,652 - RS_RS04920 0.19 +0.4
Or see this region's nucleotide sequence