Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00150

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00145 and RS_RS00150 are separated by 150 nucleotidesRS_RS00150 and RS_RS00155 are separated by 194 nucleotidesRS_RS00155 and RS_RS00160 are separated by 38 nucleotides RS_RS00145: RS_RS00145 - 4-aminobutyrate--2-oxoglutarate transaminase, at 34,078 to 35,358 _RS00145 RS_RS00150: RS_RS00150 - PLP-dependent aminotransferase family protein, at 35,509 to 37,005 _RS00150 RS_RS00155: RS_RS00155 - nucleoid occlusion factor SlmA, at 37,200 to 37,856 _RS00155 RS_RS00160: RS_RS00160 - pyrimidine 5'-nucleotidase, at 37,895 to 38,758 _RS00160 Position (kb) 35 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 34.700 kb on + strand, within RS_RS00145at 34.700 kb on + strand, within RS_RS00145at 34.701 kb on - strand, within RS_RS00145at 34.844 kb on + strand, within RS_RS00145at 34.845 kb on - strand, within RS_RS00145at 34.845 kb on - strand, within RS_RS00145at 34.845 kb on - strand, within RS_RS00145at 34.845 kb on - strand, within RS_RS00145at 34.880 kb on + strand, within RS_RS00145at 34.880 kb on + strand, within RS_RS00145at 34.880 kb on + strand, within RS_RS00145at 35.087 kb on + strand, within RS_RS00145at 35.087 kb on + strand, within RS_RS00145at 35.088 kb on - strand, within RS_RS00145at 35.096 kb on + strand, within RS_RS00145at 35.097 kb on - strand, within RS_RS00145at 35.216 kb on + strand, within RS_RS00145at 35.217 kb on - strand, within RS_RS00145at 35.217 kb on - strand, within RS_RS00145at 35.521 kb on + strandat 35.521 kb on + strandat 35.521 kb on + strandat 35.522 kb on - strandat 35.722 kb on + strand, within RS_RS00150at 35.722 kb on + strand, within RS_RS00150at 35.722 kb on + strand, within RS_RS00150at 35.722 kb on + strand, within RS_RS00150at 35.722 kb on + strand, within RS_RS00150at 35.723 kb on - strand, within RS_RS00150at 35.723 kb on - strand, within RS_RS00150at 35.723 kb on - strand, within RS_RS00150at 35.723 kb on - strand, within RS_RS00150at 35.723 kb on - strand, within RS_RS00150at 36.031 kb on + strand, within RS_RS00150at 36.032 kb on - strand, within RS_RS00150at 36.032 kb on - strand, within RS_RS00150at 36.197 kb on - strand, within RS_RS00150at 36.433 kb on + strand, within RS_RS00150at 36.434 kb on - strand, within RS_RS00150at 36.434 kb on - strand, within RS_RS00150at 36.434 kb on - strand, within RS_RS00150at 36.508 kb on + strand, within RS_RS00150at 36.508 kb on + strand, within RS_RS00150at 36.508 kb on + strand, within RS_RS00150at 36.508 kb on + strand, within RS_RS00150at 36.509 kb on - strand, within RS_RS00150at 36.509 kb on - strand, within RS_RS00150at 36.509 kb on - strand, within RS_RS00150at 36.556 kb on + strand, within RS_RS00150at 36.706 kb on + strand, within RS_RS00150at 36.707 kb on - strand, within RS_RS00150at 36.889 kb on + strandat 36.889 kb on + strandat 36.889 kb on + strandat 37.057 kb on - strandat 37.150 kb on + strandat 37.150 kb on + strandat 37.150 kb on + strandat 37.270 kb on + strand, within RS_RS00155at 37.642 kb on + strand, within RS_RS00155at 37.642 kb on + strand, within RS_RS00155at 37.642 kb on + strand, within RS_RS00155at 37.643 kb on - strand, within RS_RS00155at 37.643 kb on - strand, within RS_RS00155at 37.819 kb on - strandat 37.819 kb on - strandat 37.897 kb on - strandat 37.928 kb on + strandat 37.928 kb on + strandat 37.929 kb on - strandat 37.929 kb on - strandat 37.929 kb on - strandat 37.929 kb on - strandat 37.946 kb on + strandat 37.962 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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34,700 + RS_RS00145 0.49 -0.8
34,700 + RS_RS00145 0.49 +0.1
34,701 - RS_RS00145 0.49 +0.3
34,844 + RS_RS00145 0.60 -0.1
34,845 - RS_RS00145 0.60 -1.2
34,845 - RS_RS00145 0.60 -0.6
34,845 - RS_RS00145 0.60 -1.2
34,845 - RS_RS00145 0.60 -0.9
34,880 + RS_RS00145 0.63 -0.8
34,880 + RS_RS00145 0.63 -0.9
34,880 + RS_RS00145 0.63 +0.1
35,087 + RS_RS00145 0.79 -0.4
35,087 + RS_RS00145 0.79 -2.2
35,088 - RS_RS00145 0.79 -0.3
35,096 + RS_RS00145 0.79 -0.9
35,097 - RS_RS00145 0.80 -0.9
35,216 + RS_RS00145 0.89 -1.5
35,217 - RS_RS00145 0.89 -1.7
35,217 - RS_RS00145 0.89 +0.1
35,521 + -0.9
35,521 + +0.0
35,521 + +0.1
35,522 - -0.9
35,722 + RS_RS00150 0.14 +0.3
35,722 + RS_RS00150 0.14 +0.4
35,722 + RS_RS00150 0.14 +0.2
35,722 + RS_RS00150 0.14 +0.0
35,722 + RS_RS00150 0.14 -0.7
35,723 - RS_RS00150 0.14 +0.4
35,723 - RS_RS00150 0.14 +0.3
35,723 - RS_RS00150 0.14 -0.3
35,723 - RS_RS00150 0.14 +0.3
35,723 - RS_RS00150 0.14 -0.1
36,031 + RS_RS00150 0.35 +0.3
36,032 - RS_RS00150 0.35 +0.1
36,032 - RS_RS00150 0.35 +0.1
36,197 - RS_RS00150 0.46 +0.4
36,433 + RS_RS00150 0.62 +1.0
36,434 - RS_RS00150 0.62 -0.1
36,434 - RS_RS00150 0.62 -0.1
36,434 - RS_RS00150 0.62 +0.2
36,508 + RS_RS00150 0.67 +0.0
36,508 + RS_RS00150 0.67 -0.9
36,508 + RS_RS00150 0.67 -0.2
36,508 + RS_RS00150 0.67 -0.3
36,509 - RS_RS00150 0.67 -0.8
36,509 - RS_RS00150 0.67 -0.8
36,509 - RS_RS00150 0.67 +0.1
36,556 + RS_RS00150 0.70 -0.4
36,706 + RS_RS00150 0.80 +0.2
36,707 - RS_RS00150 0.80 +2.3
36,889 + +0.1
36,889 + -0.7
36,889 + -0.5
37,057 - +1.0
37,150 + +0.1
37,150 + -0.5
37,150 + +0.5
37,270 + RS_RS00155 0.11 +0.6
37,642 + RS_RS00155 0.67 -0.2
37,642 + RS_RS00155 0.67 +0.2
37,642 + RS_RS00155 0.67 +0.7
37,643 - RS_RS00155 0.67 +0.6
37,643 - RS_RS00155 0.67 +0.9
37,819 - +0.3
37,819 - -0.3
37,897 - +0.3
37,928 + -0.0
37,928 + +0.1
37,929 - -0.5
37,929 - +0.4
37,929 - -0.2
37,929 - -0.2
37,946 + -0.3
37,962 + +0.2

Or see this region's nucleotide sequence