Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03485

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
3,646,087	+		CCNA_03483	0.54	-1.1
3,646,087	-		CCNA_03483	0.54	+0.2
3,646,107	-		CCNA_03483	0.57	+0.6
3,646,107	-		CCNA_03483	0.57	+3.3
3,646,130	+		CCNA_03483	0.59	-0.3
3,646,205	+		CCNA_03483	0.67	-1.0
3,646,209	+		CCNA_03483	0.67	-1.3
3,646,217	-		CCNA_03483	0.68	+0.6
3,646,217	-		CCNA_03483	0.68	+0.4
3,646,217	-		CCNA_03483	0.68	-2.0
3,646,227	-		CCNA_03483	0.69	+0.4
3,646,269	-		CCNA_03483	0.74	+3.4
3,646,295	+		CCNA_03483	0.76	-1.0
3,646,321	-		CCNA_03483	0.79	+0.6
3,646,342	+		CCNA_03483	0.81	+0.0
3,646,349	-		CCNA_03483	0.82	+1.3
3,646,359	-		CCNA_03483	0.83	+0.5
3,646,373	-		CCNA_03483	0.85	-0.1
3,646,373	-		CCNA_03483	0.85	+1.4
3,646,409	-		CCNA_03483	0.88	+0.1
3,646,420	-		CCNA_03483	0.90	+1.9
3,646,470	-				+0.4
3,646,476	-				+3.7
3,646,507	+				-2.8
3,646,512	+				-2.4
3,646,515	-				+1.0
3,646,532	+				-0.3
3,646,542	+				-1.3
3,646,547	+				+0.5
3,646,550	-				+4.6
3,646,550	-				+1.3
3,646,557	+				-1.2
3,646,557	+				-0.8
3,646,557	+				+1.5
3,646,557	+				-0.2
3,646,557	+				+1.6
3,646,565	-				+0.5
3,646,565	-				+0.6
3,646,565	-				+0.6
3,646,624	+				-0.5
3,646,624	+				-1.2
3,646,624	+				+0.1
3,646,632	-				+0.2
3,646,641	+				+0.8
3,646,716	-		CCNA_03484	0.20	-0.1
3,646,726	-		CCNA_03484	0.23	+0.6
3,646,755	-		CCNA_03484	0.29	-0.1
3,646,813	+		CCNA_03484	0.41	-1.1
3,646,813	+		CCNA_03484	0.41	-1.8
3,646,821	-		CCNA_03484	0.43	+1.2
3,646,821	-		CCNA_03484	0.43	+0.0
3,646,821	-		CCNA_03484	0.43	+1.1
3,646,821	-		CCNA_03484	0.43	+0.0
3,646,821	-		CCNA_03484	0.43	-0.1
3,646,821	-		CCNA_03484	0.43	+0.8
3,646,821	-		CCNA_03484	0.43	+1.0
3,646,842	-		CCNA_03484	0.48	+1.2
3,646,870	+		CCNA_03484	0.54	+1.0
3,646,897	-		CCNA_03484	0.59	+0.1
3,646,899	+		CCNA_03484	0.60	-0.8
3,646,899	+		CCNA_03484	0.60	-0.8
3,646,899	+		CCNA_03484	0.60	-0.6
3,646,907	-		CCNA_03484	0.62	-1.4
3,646,907	-		CCNA_03484	0.62	-0.3
3,647,042	-				-0.7
3,647,042	-				-0.4
3,647,049	+				-1.7
3,647,057	-				-1.4
3,647,084	+				-2.6
3,647,149	-				+2.7
3,647,212	-		CCNA_03485	0.13	+1.7
3,647,228	+		CCNA_03485	0.14	-0.3
3,647,232	+		CCNA_03485	0.15	+0.9
3,647,238	+		CCNA_03485	0.15	-1.3
3,647,238	+		CCNA_03485	0.15	-2.2
3,647,248	-		CCNA_03485	0.17	+1.0
3,647,248	-		CCNA_03485	0.17	+0.2
3,647,253	+		CCNA_03485	0.17	+0.5
3,647,273	+		CCNA_03485	0.19	-1.3
3,647,273	+		CCNA_03485	0.19	-0.5
3,647,280	+		CCNA_03485	0.20	+0.8
3,647,281	-		CCNA_03485	0.20	+1.6
3,647,288	-		CCNA_03485	0.21	+1.5
3,647,293	-		CCNA_03485	0.21	+1.7
3,647,293	-		CCNA_03485	0.21	+0.7
3,647,293	-		CCNA_03485	0.21	-1.7
3,647,293	-		CCNA_03485	0.21	+0.7
3,647,298	+		CCNA_03485	0.22	+0.0
3,647,395	-		CCNA_03485	0.32	+0.1
3,647,397	-		CCNA_03485	0.32	-1.7
3,647,397	-		CCNA_03485	0.32	+0.5
3,647,397	-		CCNA_03485	0.32	+0.1
3,647,421	+		CCNA_03485	0.34	-0.3
3,647,447	+		CCNA_03485	0.37	-0.3
3,647,455	-		CCNA_03485	0.38	+3.0
3,647,469	+		CCNA_03485	0.39	-1.2
3,647,469	+		CCNA_03485	0.39	-0.0
3,647,496	+		CCNA_03485	0.42	-0.3
3,647,526	+		CCNA_03485	0.45	+0.5
3,647,526	+		CCNA_03485	0.45	-0.3
3,647,578	-		CCNA_03485	0.50	-0.1
3,647,583	+		CCNA_03485	0.51	-0.1
3,647,591	-		CCNA_03485	0.52	+1.2
3,647,591	-		CCNA_03485	0.52	+1.6
3,647,669	+		CCNA_03485	0.60	-1.0
3,647,681	+		CCNA_03485	0.61	-0.8
3,647,713	+		CCNA_03485	0.64	-1.5
3,647,725	-		CCNA_03485	0.65	+0.5
3,647,725	-		CCNA_03485	0.65	+0.9
3,647,726	-		CCNA_03485	0.66	+0.7
3,647,731	+		CCNA_03485	0.66	-1.1
3,647,733	+		CCNA_03485	0.66	-1.0
3,647,747	-		CCNA_03485	0.68	+1.0
3,647,800	+		CCNA_03485	0.73	-0.9
3,647,819	-		CCNA_03485	0.75	-0.1
3,647,831	-		CCNA_03485	0.76	-0.1
3,647,831	-		CCNA_03485	0.76	+1.4
3,647,848	+		CCNA_03485	0.78	+1.3
3,647,849	-		CCNA_03485	0.78	-1.8
3,647,859	+		CCNA_03485	0.79	-2.7
3,647,859	+		CCNA_03485	0.79	-2.3
3,647,866	-		CCNA_03485	0.80	+1.0
3,647,960	+		CCNA_03485	0.90	-0.6
3,647,968	-				+0.0
3,647,968	-				+1.2
3,648,006	+				-0.8
3,648,064	-				+0.6
3,648,064	-				+1.3
3,648,067	-				+1.7
3,648,087	+				-0.9
3,648,087	+				-0.8
3,648,102	-				-0.5
3,648,119	-				+0.8
3,648,163	+		CCNA_03486	0.16	-0.2
3,648,163	+		CCNA_03486	0.16	-0.1
3,648,171	-		CCNA_03486	0.17	-0.2
3,648,173	+		CCNA_03486	0.18	-2.2
3,648,173	+		CCNA_03486	0.18	-2.4
3,648,179	+		CCNA_03486	0.19	-0.5
3,648,179	+		CCNA_03486	0.19	-0.8
3,648,186	+		CCNA_03486	0.21	-2.3
3,648,186	+		CCNA_03486	0.21	+0.9
3,648,186	+		CCNA_03486	0.21	-0.6
3,648,186	+		CCNA_03486	0.21	-0.8
3,648,186	+		CCNA_03486	0.21	+0.3
3,648,186	+		CCNA_03486	0.21	-1.4
3,648,206	+		CCNA_03486	0.26	+1.4
3,648,225	-		CCNA_03486	0.30	-0.0
3,648,274	+		CCNA_03486	0.41	-1.3
3,648,274	+		CCNA_03486	0.41	-1.3
3,648,274	+		CCNA_03486	0.41	-0.1
3,648,276	+		CCNA_03486	0.42	-2.5
3,648,282	-		CCNA_03486	0.43	+0.0
3,648,284	-		CCNA_03486	0.44	+0.2
3,648,314	-		CCNA_03486	0.51	-0.8
3,648,320	+		CCNA_03486	0.52	+1.3
3,648,352	+		CCNA_03486	0.60	-1.3
3,648,352	+		CCNA_03486	0.60	-0.3
3,648,360	-		CCNA_03486	0.62	+0.5
3,648,360	-		CCNA_03486	0.62	+1.3
3,648,360	-		CCNA_03486	0.62	-1.7
3,648,375	-		CCNA_03486	0.65	-1.0
3,648,390	-		CCNA_03486	0.69	+0.3
3,648,399	+		CCNA_03486	0.71	+0.4
3,648,410	+		CCNA_03486	0.73	-2.3
3,648,418	-		CCNA_03486	0.75	-0.4
3,648,418	-		CCNA_03486	0.75	+1.1
3,648,418	-		CCNA_03486	0.75	-0.2
3,648,432	+		CCNA_03486	0.78	-1.6
3,648,451	+		CCNA_03486	0.83	-1.7
3,648,475	-		CCNA_03486	0.88	+0.9
3,648,497	-				+0.9
3,648,563	-				-2.8
3,648,724	-		CCNA_03487	0.16	-0.3
3,648,724	-		CCNA_03487	0.16	-2.7
3,648,724	-		CCNA_03487	0.16	-2.7
3,648,751	-		CCNA_03487	0.28	-1.4
3,648,767	-		CCNA_03487	0.35	+0.7
3,648,768	-		CCNA_03487	0.36	-0.8
3,648,789	-		CCNA_03487	0.45	-0.8
3,648,813	-		CCNA_03487	0.55	-1.6
3,648,840	+		CCNA_03487	0.67	-2.0
3,648,840	+		CCNA_03487	0.67	-1.6
3,648,841	+		CCNA_03487	0.68	-0.8
3,648,841	+		CCNA_03487	0.68	-2.2
3,648,849	-		CCNA_03487	0.71	+0.2
3,648,881	-		CCNA_03487	0.85	-1.6
3,648,926	-				-0.4
3,648,928	+				-0.2
3,648,928	+				-0.5
3,648,928	+				+0.2
3,648,928	+				-1.8
3,648,928	+				-0.8
3,648,936	-				-2.8
3,648,944	-				-0.8
3,648,944	-				-2.7