Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01554

Experiment: nitrate (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate (N)
1,668,116	-		CCNA_01552	0.85	-0.0
1,668,133	-		CCNA_01552	0.85	+0.3
1,668,135	-		CCNA_01552	0.85	-0.5
1,668,136	+		CCNA_01552	0.86	+2.1
1,668,139	+		CCNA_01552	0.86	+1.2
1,668,152	-		CCNA_01552	0.86	-0.3
1,668,161	+		CCNA_01552	0.86	+2.0
1,668,161	+		CCNA_01552	0.86	+1.9
1,668,169	-		CCNA_01552	0.87	-1.5
1,668,169	-		CCNA_01552	0.87	+0.4
1,668,187	+		CCNA_01552	0.87	+2.2
1,668,190	+		CCNA_01552	0.88	+3.0
1,668,193	-		CCNA_01552	0.88	+0.7
1,668,200	-		CCNA_01552	0.88	+0.2
1,668,200	-		CCNA_01552	0.88	-0.9
1,668,231	-		CCNA_01552	0.89	-1.5
1,668,270	-				-1.6
1,668,270	-				-0.3
1,668,295	-				+2.3
1,668,297	+				-0.2
1,668,374	-				-1.2
1,668,384	+				+0.7
1,668,393	+				+1.7
1,668,430	+				+2.1
1,668,451	+				+1.7
1,668,454	+				+2.1
1,668,454	+				+1.7
1,668,459	-				-1.6
1,668,462	-				-0.1
1,668,472	+				+1.7
1,668,480	-				-0.2
1,668,513	+				+1.9
1,668,513	+				+1.7
1,668,521	-				+0.6
1,668,521	-				-0.5
1,668,521	-				-1.2
1,668,521	-				-1.5
1,668,544	+				-0.1
1,668,547	-				-0.2
1,668,552	-				-1.5
1,668,552	-				-2.7
1,668,566	+				-0.6
1,668,587	-				-1.5
1,668,639	+		CCNA_01553	0.19	+0.7
1,668,647	-		CCNA_01553	0.20	-0.0
1,668,647	-		CCNA_01553	0.20	-0.9
1,668,647	-		CCNA_01553	0.20	-1.2
1,668,726	-		CCNA_01553	0.34	-2.2
1,668,726	-		CCNA_01553	0.34	-0.7
1,668,748	+		CCNA_01553	0.38	+0.4
1,668,768	-		CCNA_01553	0.42	-0.7
1,668,815	+		CCNA_01553	0.50	+0.5
1,668,815	+		CCNA_01553	0.50	+1.3
1,668,815	+		CCNA_01553	0.50	-1.7
1,668,815	+		CCNA_01553	0.50	+0.0
1,668,815	+		CCNA_01553	0.50	-0.6
1,668,815	+		CCNA_01553	0.50	-0.4
1,668,823	-		CCNA_01553	0.52	+2.6
1,668,823	-		CCNA_01553	0.52	-0.0
1,668,823	-		CCNA_01553	0.52	+1.9
1,668,823	-		CCNA_01553	0.52	-1.8
1,668,823	-		CCNA_01553	0.52	-0.0
1,668,823	-		CCNA_01553	0.52	-0.7
1,668,839	+		CCNA_01553	0.54	+1.4
1,668,843	+		CCNA_01553	0.55	-0.3
1,668,859	+		CCNA_01553	0.58	+0.7
1,668,864	+		CCNA_01553	0.59	-0.5
1,668,867	-		CCNA_01553	0.59	-1.4
1,668,910	+		CCNA_01553	0.67	-0.4
1,668,931	+		CCNA_01553	0.71	-0.1
1,668,945	+		CCNA_01553	0.73	+0.2
1,669,000	+		CCNA_01553	0.83	+1.0
1,669,023	+		CCNA_01553	0.87	+1.2
1,669,054	-				+2.9
1,669,073	-				+1.5
1,669,104	+				-0.0
1,669,104	+				-0.3
1,669,112	-				+0.9
1,669,153	-				+1.6
1,669,169	+				+2.5
1,669,169	+				+1.2
1,669,169	+				+1.9
1,669,172	-				+1.3
1,669,177	-				-0.8
1,669,192	+				+0.8
1,669,192	+				+0.7
1,669,192	+				+0.6
1,669,202	+				-0.9
1,669,205	-				+1.0
1,669,205	-				+1.7
1,669,210	-				-1.1
1,669,270	-		CCNA_01554	0.12	-2.0
1,669,352	-		CCNA_01554	0.18	-2.0
1,669,353	-		CCNA_01554	0.18	+2.7
1,669,353	-		CCNA_01554	0.18	-0.0
1,669,407	-		CCNA_01554	0.22	-2.3
1,669,463	-		CCNA_01554	0.26	-0.9
1,669,480	+		CCNA_01554	0.27	+1.7
1,669,480	+		CCNA_01554	0.27	+1.7
1,669,484	-		CCNA_01554	0.27	+1.3
1,669,488	-		CCNA_01554	0.27	-0.0
1,669,498	+		CCNA_01554	0.28	-1.6
1,669,552	+		CCNA_01554	0.32	+0.2
1,669,560	-		CCNA_01554	0.32	-1.5
1,669,605	+		CCNA_01554	0.35	-0.3
1,669,605	+		CCNA_01554	0.35	+1.3
1,669,605	+		CCNA_01554	0.35	+0.1
1,669,605	+		CCNA_01554	0.35	-1.2
1,669,613	-		CCNA_01554	0.36	-0.9
1,669,653	-		CCNA_01554	0.39	-0.3
1,669,654	+		CCNA_01554	0.39	-3.1
1,669,662	-		CCNA_01554	0.39	-0.5
1,669,669	+		CCNA_01554	0.40	+4.1
1,669,687	+		CCNA_01554	0.41	+0.7
1,669,695	-		CCNA_01554	0.42	-0.5
1,669,697	+		CCNA_01554	0.42	-1.1
1,669,705	-		CCNA_01554	0.42	+1.0
1,669,743	-		CCNA_01554	0.45	-1.7
1,669,745	+		CCNA_01554	0.45	-0.9
1,669,752	+		CCNA_01554	0.46	-0.8
1,669,767	+		CCNA_01554	0.47	+2.1
1,669,785	-		CCNA_01554	0.48	-0.9
1,669,786	-		CCNA_01554	0.48	-1.9
1,669,792	+		CCNA_01554	0.48	-1.2
1,669,828	-		CCNA_01554	0.51	+0.2
1,670,015	+		CCNA_01554	0.64	-1.3
1,670,016	+		CCNA_01554	0.64	-1.3
1,670,024	-		CCNA_01554	0.64	-2.9
1,670,065	+		CCNA_01554	0.67	-0.7
1,670,076	+		CCNA_01554	0.68	+0.1
1,670,076	+		CCNA_01554	0.68	+0.9
1,670,126	-		CCNA_01554	0.71	-2.2
1,670,137	+		CCNA_01554	0.72	-0.5
1,670,145	-		CCNA_01554	0.73	-2.0
1,670,145	-		CCNA_01554	0.73	-1.4
1,670,145	-		CCNA_01554	0.73	-1.6
1,670,146	-		CCNA_01554	0.73	+0.1
1,670,151	-		CCNA_01554	0.73	-2.3
1,670,151	-		CCNA_01554	0.73	-1.8
1,670,290	+		CCNA_01554	0.83	-0.0
1,670,298	-		CCNA_01554	0.83	-2.0
1,670,338	-		CCNA_01554	0.86	-0.7
1,670,381	+		CCNA_01554	0.89	+1.7
1,670,404	+				-0.5
1,670,509	+				-0.0
1,670,509	+				-0.6
1,670,517	-				-1.2
1,670,517	-				+0.1
1,670,517	-				+0.2
1,670,547	+				-1.0
1,670,569	+				+2.6
1,670,726	-				+1.3
1,670,764	+				-1.0
1,670,764	+				-0.5
1,670,764	-				-0.5
1,670,772	-				-0.0
1,670,826	-		CCNA_01555	0.13	-0.2
1,670,851	+		CCNA_01555	0.15	-3.2
1,670,859	-		CCNA_01555	0.15	-0.6
1,670,859	-		CCNA_01555	0.15	+0.7
1,670,876	-		CCNA_01555	0.17	+0.3
1,670,915	+		CCNA_01555	0.19	+1.9
1,670,932	+				+3.6
1,670,953	+		CCNA_01555	0.22	-0.9
1,670,953	+		CCNA_01555	0.22	-1.3
1,670,958	+		CCNA_01555	0.22	+0.2
1,670,960	-		CCNA_01555	0.22	-0.7
1,670,986	+		CCNA_01555	0.24	-0.7
1,671,019	+		CCNA_01555	0.26	-1.5
1,671,027	-		CCNA_01555	0.27	-0.9
1,671,053	+		CCNA_01555	0.28	-2.7
1,671,055	+		CCNA_01555	0.28	+0.3
1,671,064	-		CCNA_01555	0.29	-0.5
1,671,231	+		CCNA_01555	0.40	-1.0
1,671,242	+		CCNA_01555	0.41	-0.3
1,671,332	+		CCNA_01555	0.47	-0.2
1,671,333	-		CCNA_01555	0.47	-1.7
1,671,357	-		CCNA_01555	0.48	-0.4
1,671,365	+		CCNA_01555	0.49	-0.3
1,671,367	-		CCNA_01555	0.49	-0.4
1,671,367	-		CCNA_01555	0.49	-0.7
1,671,414	-		CCNA_01555	0.52	-0.3
1,671,444	-		CCNA_01555	0.54	-0.0
1,671,453	+				+2.6
1,671,460	-		CCNA_01555	0.55	-2.3
1,671,461	-		CCNA_01555	0.55	-0.4
1,671,470	-		CCNA_01555	0.56	+0.7
1,671,485	+		CCNA_01555	0.57	-1.2
1,671,493	-		CCNA_01555	0.57	+0.4
1,671,493	-		CCNA_01555	0.57	-0.4
1,671,493	-		CCNA_01555	0.57	-0.7
1,671,520	+		CCNA_01555	0.59	-0.5
1,671,527	+		CCNA_01555	0.60	-0.1
1,671,528	-		CCNA_01555	0.60	-1.3