Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00502

Experiment: nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00501 and CCNA_00502 are separated by 56 nucleotidesCCNA_00502 and CCNA_00503 are separated by 98 nucleotidesCCNA_00503 and CCNA_00504 overlap by 4 nucleotides CCNA_00501: CCNA_00501 - glucosyltransferase, at 516,738 to 518,417 _00501 CCNA_00502: CCNA_00502 - glycosyl transferase family protein, at 518,474 to 519,211 _00502 CCNA_00503: CCNA_00503 - hypothetical protein, at 519,310 to 519,732 _00503 CCNA_00504: CCNA_00504 - 23S rRNA methyltransferase, at 519,729 to 520,193 _00504 Position (kb) 518 519 520Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 517.521 kb on + strand, within CCNA_00501at 517.586 kb on - strand, within CCNA_00501at 517.586 kb on - strand, within CCNA_00501at 517.671 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.710 kb on - strand, within CCNA_00501at 517.716 kb on - strand, within CCNA_00501at 517.792 kb on + strand, within CCNA_00501at 517.792 kb on + strand, within CCNA_00501at 517.847 kb on - strand, within CCNA_00501at 517.847 kb on - strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.903 kb on + strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.911 kb on - strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.918 kb on + strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.926 kb on - strand, within CCNA_00501at 517.947 kb on - strand, within CCNA_00501at 517.972 kb on + strand, within CCNA_00501at 517.980 kb on - strand, within CCNA_00501at 517.980 kb on - strand, within CCNA_00501at 518.053 kb on + strand, within CCNA_00501at 518.128 kb on - strand, within CCNA_00501at 518.131 kb on + strand, within CCNA_00501at 518.139 kb on - strand, within CCNA_00501at 518.344 kb on + strandat 518.433 kb on - strandat 518.461 kb on + strandat 518.774 kb on + strand, within CCNA_00502at 519.206 kb on + strandat 519.214 kb on - strandat 519.214 kb on - strandat 519.251 kb on - strandat 519.258 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.259 kb on + strandat 519.267 kb on - strandat 519.267 kb on - strandat 519.267 kb on - strandat 519.299 kb on + strandat 519.312 kb on - strandat 519.312 kb on - strandat 519.328 kb on + strandat 519.336 kb on - strandat 519.365 kb on + strand, within CCNA_00503at 519.373 kb on - strand, within CCNA_00503at 519.375 kb on + strand, within CCNA_00503at 519.383 kb on - strand, within CCNA_00503at 519.384 kb on + strand, within CCNA_00503at 519.391 kb on - strand, within CCNA_00503at 519.414 kb on - strand, within CCNA_00503at 519.435 kb on + strand, within CCNA_00503at 519.435 kb on + strand, within CCNA_00503at 519.443 kb on - strand, within CCNA_00503at 519.448 kb on + strand, within CCNA_00503at 519.463 kb on - strand, within CCNA_00503at 519.467 kb on + strand, within CCNA_00503at 519.475 kb on - strand, within CCNA_00503at 519.480 kb on + strand, within CCNA_00503at 519.499 kb on + strand, within CCNA_00503at 519.582 kb on - strand, within CCNA_00503at 519.584 kb on + strand, within CCNA_00503at 519.592 kb on - strand, within CCNA_00503at 519.592 kb on - strand, within CCNA_00503at 519.599 kb on + strand, within CCNA_00503at 519.649 kb on - strand, within CCNA_00503at 519.655 kb on - strand, within CCNA_00503at 519.677 kb on + strand, within CCNA_00503at 519.685 kb on - strand, within CCNA_00503at 519.767 kb on - strandat 519.772 kb on - strandat 519.774 kb on - strandat 519.815 kb on + strand, within CCNA_00504at 519.815 kb on + strand, within CCNA_00504at 519.836 kb on + strand, within CCNA_00504at 519.856 kb on + strand, within CCNA_00504at 519.864 kb on - strand, within CCNA_00504at 519.910 kb on - strand, within CCNA_00504at 519.910 kb on - strand, within CCNA_00504at 519.960 kb on + strand, within CCNA_00504at 519.991 kb on + strand, within CCNA_00504at 519.991 kb on + strand, within CCNA_00504at 519.992 kb on - strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.047 kb on + strand, within CCNA_00504at 520.055 kb on - strand, within CCNA_00504at 520.055 kb on - strandat 520.062 kb on + strand, within CCNA_00504at 520.062 kb on + strand, within CCNA_00504at 520.070 kb on - strand, within CCNA_00504at 520.090 kb on - strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.106 kb on + strand, within CCNA_00504at 520.107 kb on + strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.114 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.115 kb on - strand, within CCNA_00504at 520.136 kb on + strand, within CCNA_00504at 520.136 kb on + strand, within CCNA_00504at 520.163 kb on - strandat 520.171 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
remove
517,521 + CCNA_00501 0.47 +0.1
517,586 - CCNA_00501 0.50 -1.8
517,586 - CCNA_00501 0.50 -2.3
517,671 - CCNA_00501 0.56 -1.2
517,710 - CCNA_00501 0.58 -0.2
517,710 - CCNA_00501 0.58 -2.4
517,710 - CCNA_00501 0.58 +0.1
517,710 - CCNA_00501 0.58 -1.9
517,710 - CCNA_00501 0.58 -3.5
517,716 - CCNA_00501 0.58 -2.4
517,792 + CCNA_00501 0.63 +0.5
517,792 + CCNA_00501 0.63 -0.7
517,847 - CCNA_00501 0.66 +1.1
517,847 - CCNA_00501 0.66 -1.1
517,903 + CCNA_00501 0.69 -2.5
517,903 + CCNA_00501 0.69 -1.5
517,903 + CCNA_00501 0.69 -0.9
517,903 + CCNA_00501 0.69 -1.9
517,903 + CCNA_00501 0.69 -0.3
517,903 + CCNA_00501 0.69 -2.9
517,911 - CCNA_00501 0.70 -1.1
517,911 - CCNA_00501 0.70 -1.3
517,911 - CCNA_00501 0.70 -2.9
517,911 - CCNA_00501 0.70 -1.7
517,911 - CCNA_00501 0.70 +1.1
517,911 - CCNA_00501 0.70 -0.2
517,911 - CCNA_00501 0.70 -1.8
517,911 - CCNA_00501 0.70 -2.0
517,918 + CCNA_00501 0.70 -1.1
517,918 + CCNA_00501 0.70 -1.8
517,918 + CCNA_00501 0.70 -1.8
517,918 + CCNA_00501 0.70 -0.2
517,918 + CCNA_00501 0.70 -1.1
517,918 + CCNA_00501 0.70 +0.5
517,918 + CCNA_00501 0.70 -0.9
517,918 + CCNA_00501 0.70 -1.9
517,918 + CCNA_00501 0.70 -0.5
517,918 + CCNA_00501 0.70 +0.5
517,926 - CCNA_00501 0.71 -1.9
517,926 - CCNA_00501 0.71 -2.4
517,926 - CCNA_00501 0.71 -0.4
517,926 - CCNA_00501 0.71 -2.1
517,926 - CCNA_00501 0.71 -0.2
517,926 - CCNA_00501 0.71 -0.6
517,926 - CCNA_00501 0.71 +0.5
517,926 - CCNA_00501 0.71 -0.8
517,926 - CCNA_00501 0.71 -0.9
517,926 - CCNA_00501 0.71 -1.5
517,947 - CCNA_00501 0.72 -2.0
517,972 + CCNA_00501 0.73 -2.5
517,980 - CCNA_00501 0.74 +0.5
517,980 - CCNA_00501 0.74 -0.9
518,053 + CCNA_00501 0.78 -1.1
518,128 - CCNA_00501 0.83 -2.1
518,131 + CCNA_00501 0.83 -2.7
518,139 - CCNA_00501 0.83 -1.6
518,344 + +0.1
518,433 - -0.2
518,461 + -1.4
518,774 + CCNA_00502 0.41 +1.1
519,206 + +1.7
519,214 - -0.9
519,214 - -0.3
519,251 - +0.7
519,258 + +1.3
519,259 + +1.5
519,259 + +1.1
519,259 + +1.3
519,259 + +1.1
519,259 + +1.6
519,259 + +1.9
519,267 - -1.4
519,267 - -1.0
519,267 - -2.8
519,299 + +0.2
519,312 - -1.9
519,312 - -1.6
519,328 + +0.1
519,336 - -2.1
519,365 + CCNA_00503 0.13 +0.2
519,373 - CCNA_00503 0.15 +1.6
519,375 + CCNA_00503 0.15 -0.5
519,383 - CCNA_00503 0.17 +2.2
519,384 + CCNA_00503 0.17 +4.7
519,391 - CCNA_00503 0.19 +0.7
519,414 - CCNA_00503 0.25 -2.4
519,435 + CCNA_00503 0.30 +1.1
519,435 + CCNA_00503 0.30 +0.6
519,443 - CCNA_00503 0.31 +1.1
519,448 + CCNA_00503 0.33 +0.9
519,463 - CCNA_00503 0.36 +0.8
519,467 + CCNA_00503 0.37 +1.0
519,475 - CCNA_00503 0.39 -1.2
519,480 + CCNA_00503 0.40 +1.2
519,499 + CCNA_00503 0.45 -0.7
519,582 - CCNA_00503 0.64 +1.1
519,584 + CCNA_00503 0.65 +0.8
519,592 - CCNA_00503 0.67 -2.3
519,592 - CCNA_00503 0.67 -0.9
519,599 + CCNA_00503 0.68 +1.7
519,649 - CCNA_00503 0.80 +0.4
519,655 - CCNA_00503 0.82 +0.3
519,677 + CCNA_00503 0.87 +0.9
519,685 - CCNA_00503 0.89 +2.0
519,767 - -0.2
519,772 - +1.6
519,774 - +0.4
519,815 + CCNA_00504 0.18 +0.7
519,815 + CCNA_00504 0.18 -0.4
519,836 + CCNA_00504 0.23 +0.6
519,856 + CCNA_00504 0.27 -1.0
519,864 - CCNA_00504 0.29 +1.1
519,910 - CCNA_00504 0.39 +1.8
519,910 - CCNA_00504 0.39 +0.9
519,960 + CCNA_00504 0.50 -0.2
519,991 + CCNA_00504 0.56 +0.1
519,991 + CCNA_00504 0.56 -0.7
519,992 - CCNA_00504 0.57 -1.9
520,047 + CCNA_00504 0.68 -0.3
520,047 + CCNA_00504 0.68 -1.0
520,055 - CCNA_00504 0.70 +0.5
520,055 - +3.1
520,062 + CCNA_00504 0.72 -1.5
520,062 + CCNA_00504 0.72 -1.2
520,070 - CCNA_00504 0.73 +0.1
520,090 - CCNA_00504 0.78 +2.1
520,106 + CCNA_00504 0.81 -0.6
520,106 + CCNA_00504 0.81 -1.0
520,106 + CCNA_00504 0.81 -0.2
520,106 + CCNA_00504 0.81 -0.3
520,106 + CCNA_00504 0.81 +0.7
520,106 + CCNA_00504 0.81 -2.3
520,106 + CCNA_00504 0.81 -2.6
520,106 + CCNA_00504 0.81 -0.0
520,106 + CCNA_00504 0.81 -1.1
520,107 + CCNA_00504 0.81 +1.0
520,114 - CCNA_00504 0.83 +1.8
520,114 - CCNA_00504 0.83 -0.7
520,114 - CCNA_00504 0.83 +0.2
520,114 - CCNA_00504 0.83 -0.1
520,114 - CCNA_00504 0.83 +0.4
520,114 - CCNA_00504 0.83 +0.1
520,114 - CCNA_00504 0.83 +0.2
520,115 - CCNA_00504 0.83 +4.5
520,115 - CCNA_00504 0.83 -1.9
520,115 - CCNA_00504 0.83 -0.4
520,115 - CCNA_00504 0.83 -1.5
520,115 - CCNA_00504 0.83 -0.8
520,115 - CCNA_00504 0.83 +0.4
520,136 + CCNA_00504 0.88 -1.2
520,136 + CCNA_00504 0.88 +0.9
520,163 - -1.8
520,171 + +1.4

Or see this region's nucleotide sequence