Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11355

Experiment: R2A with Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Spectinomycin 0.025 mg/ml
2,817,131	+		CA265_RS11350	0.49	+0.7
2,817,227	+		CA265_RS11350	0.55	+0.8
2,817,227	+		CA265_RS11350	0.55	-0.3
2,817,271	-		CA265_RS11350	0.57	-0.8
2,817,326	+		CA265_RS11350	0.61	-1.0
2,817,326	+		CA265_RS11350	0.61	-0.1
2,817,336	-		CA265_RS11350	0.61	-0.8
2,817,359	+		CA265_RS11350	0.63	-0.2
2,817,359	+		CA265_RS11350	0.63	+0.2
2,817,360	-		CA265_RS11350	0.63	+0.3
2,817,360	-		CA265_RS11350	0.63	+1.0
2,817,383	+		CA265_RS11350	0.64	-0.8
2,817,384	-		CA265_RS11350	0.64	+0.3
2,817,396	-		CA265_RS11350	0.65	+0.1
2,817,398	+		CA265_RS11350	0.65	+0.3
2,817,479	+		CA265_RS11350	0.70	-0.2
2,817,563	+		CA265_RS11350	0.75	+0.2
2,817,580	+		CA265_RS11350	0.76	-0.2
2,817,580	+		CA265_RS11350	0.76	-0.6
2,817,678	+		CA265_RS11350	0.83	+0.3
2,817,698	-		CA265_RS11350	0.84	-0.9
2,817,699	+		CA265_RS11350	0.84	-1.5
2,817,700	-		CA265_RS11350	0.84	-0.2
2,817,725	+		CA265_RS11350	0.85	+2.0
2,817,726	-		CA265_RS11350	0.86	-1.4
2,817,735	-		CA265_RS11350	0.86	+1.8
2,817,777	+		CA265_RS11350	0.89	-2.3
2,817,799	-				+0.0
2,817,843	-				-0.5
2,817,933	+				-1.2
2,817,953	+				-1.4
2,818,033	-				+1.3
2,818,154	+				+1.7
2,818,161	+				+0.5
2,818,161	+				+0.3
2,818,161	+				-0.2
2,818,162	-				-1.6
2,818,196	-				-1.6
2,818,248	+		CA265_RS11355	0.13	-0.5
2,818,248	+		CA265_RS11355	0.13	-0.7
2,818,248	+		CA265_RS11355	0.13	-0.0
2,818,325	+		CA265_RS11355	0.19	+0.6
2,818,326	-		CA265_RS11355	0.19	-0.6
2,818,380	-		CA265_RS11355	0.23	-2.3
2,818,402	-		CA265_RS11355	0.24	-1.9
2,818,412	-		CA265_RS11355	0.25	+0.3
2,818,499	-		CA265_RS11355	0.32	+0.6
2,818,541	+		CA265_RS11355	0.35	+0.2
2,818,574	+		CA265_RS11355	0.37	-0.7
2,818,691	-		CA265_RS11355	0.46	+0.5
2,818,696	-		CA265_RS11355	0.47	-0.5
2,818,767	+		CA265_RS11355	0.52	+0.5
2,818,956	+		CA265_RS11355	0.66	-0.5
2,818,995	-		CA265_RS11355	0.69	-0.2
2,819,033	-		CA265_RS11355	0.72	-0.0
2,819,083	+		CA265_RS11355	0.76	-0.3
2,819,084	-		CA265_RS11355	0.76	-1.0
2,819,084	-		CA265_RS11355	0.76	-0.7
2,819,193	+		CA265_RS11355	0.84	+0.5
2,819,201	+		CA265_RS11355	0.85	-1.2
2,819,262	-		CA265_RS11355	0.89	-1.5
2,819,362	-				-0.8
2,819,371	-				+0.7
2,819,377	+				-1.1
2,819,497	-				+0.1
2,819,499	+				+0.5
2,819,523	-		CA265_RS11360	0.11	-0.5
2,819,532	-		CA265_RS11360	0.12	+0.4
2,819,615	+		CA265_RS11360	0.21	-1.9
2,819,616	-		CA265_RS11360	0.22	+0.1
2,819,616	-		CA265_RS11360	0.22	-0.9
2,819,619	+		CA265_RS11360	0.22	-0.1
2,819,691	+		CA265_RS11360	0.30	-0.6
2,819,691	+		CA265_RS11360	0.30	-1.5
2,819,692	-		CA265_RS11360	0.30	-0.1
2,819,700	+		CA265_RS11360	0.31	-0.3
2,819,721	+		CA265_RS11360	0.33	-1.3
2,819,782	-		CA265_RS11360	0.40	+0.5
2,819,786	+		CA265_RS11360	0.40	+0.0
2,819,786	+		CA265_RS11360	0.40	+0.5
2,819,788	+		CA265_RS11360	0.41	-0.7
2,819,790	+		CA265_RS11360	0.41	-0.8
2,819,791	-		CA265_RS11360	0.41	-1.2
2,819,798	+		CA265_RS11360	0.42	-0.0
2,819,799	-		CA265_RS11360	0.42	-0.1
2,819,858	+		CA265_RS11360	0.48	-0.5
2,819,859	-		CA265_RS11360	0.49	-0.0
2,819,883	+		CA265_RS11360	0.51	-1.9
2,819,936	-		CA265_RS11360	0.57	-0.3
2,819,942	-				+1.4
2,819,961	+		CA265_RS11360	0.60	-2.9
2,819,961	+		CA265_RS11360	0.60	+0.2
2,819,976	+		CA265_RS11360	0.61	-0.6
2,819,977	-		CA265_RS11360	0.62	+0.0
2,819,981	+		CA265_RS11360	0.62	+0.1
2,819,982	-		CA265_RS11360	0.62	-0.1
2,820,027	+		CA265_RS11360	0.67	-0.1
2,820,027	+		CA265_RS11360	0.67	-0.0
2,820,028	-		CA265_RS11360	0.67	-1.0
2,820,028	-		CA265_RS11360	0.67	-0.5
2,820,119	+		CA265_RS11360	0.77	+0.4
2,820,157	-		CA265_RS11360	0.82	-1.0
2,820,269	+				+0.6
2,820,283	-				-0.5
2,820,286	-				-0.5
2,820,342	-				+0.5
2,820,342	-				-0.8