Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19895

Experiment: CDM1 without Proline

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Proline
2,261,008	+		BBR_RS19890	0.28	+0.0
2,261,009	+		BBR_RS19890	0.28	-0.9
2,261,009	+		BBR_RS19890	0.28	-2.5
2,261,016	+		BBR_RS19890	0.29	+0.9
2,261,018	-		BBR_RS19890	0.29	+1.7
2,261,024	-		BBR_RS19890	0.30	+0.4
2,261,031	+		BBR_RS19890	0.31	-1.1
2,261,046	+		BBR_RS19890	0.32	-0.6
2,261,046	+		BBR_RS19890	0.32	-1.6
2,261,057	+		BBR_RS19890	0.33	-0.2
2,261,077	+		BBR_RS19890	0.35	+0.6
2,261,079	+		BBR_RS19890	0.35	+0.0
2,261,084	-		BBR_RS19890	0.36	-0.3
2,261,085	-		BBR_RS19890	0.36	+0.2
2,261,085	-		BBR_RS19890	0.36	+0.8
2,261,085	-		BBR_RS19890	0.36	-1.4
2,261,085	-		BBR_RS19890	0.36	+1.6
2,261,085	-		BBR_RS19890	0.36	+0.3
2,261,091	-		BBR_RS19890	0.37	-0.4
2,261,104	+		BBR_RS19890	0.38	-0.8
2,261,121	-		BBR_RS19890	0.40	-0.5
2,261,121	-		BBR_RS19890	0.40	-2.1
2,261,126	-		BBR_RS19890	0.40	-0.2
2,261,128	+		BBR_RS19890	0.40	+1.5
2,261,129	+		BBR_RS19890	0.41	+0.6
2,261,132	-		BBR_RS19890	0.41	+0.9
2,261,135	+		BBR_RS19890	0.41	+0.0
2,261,136	-		BBR_RS19890	0.41	-0.2
2,261,136	-		BBR_RS19890	0.41	+0.6
2,261,136	-		BBR_RS19890	0.41	+0.1
2,261,137	-		BBR_RS19890	0.41	+0.6
2,261,147	+		BBR_RS19890	0.42	+0.8
2,261,162	-		BBR_RS19890	0.44	+1.5
2,261,176	+		BBR_RS19890	0.45	-1.0
2,261,176	+		BBR_RS19890	0.45	+0.1
2,261,176	+		BBR_RS19890	0.45	+0.8
2,261,176	-		BBR_RS19890	0.45	-0.1
2,261,176	-		BBR_RS19890	0.45	-0.2
2,261,182	-		BBR_RS19890	0.46	-1.1
2,261,184	-		BBR_RS19890	0.46	-0.3
2,261,184	-		BBR_RS19890	0.46	+1.1
2,261,184	-		BBR_RS19890	0.46	-0.8
2,261,184	-		BBR_RS19890	0.46	+0.6
2,261,186	+		BBR_RS19890	0.46	-0.7
2,261,186	+		BBR_RS19890	0.46	+0.2
2,261,208	-		BBR_RS19890	0.49	+0.6
2,261,224	-		BBR_RS19890	0.50	-0.3
2,261,231	-		BBR_RS19890	0.51	+1.6
2,261,247	+		BBR_RS19890	0.53	-0.3
2,261,249	-		BBR_RS19890	0.53	+0.8
2,261,253	-		BBR_RS19890	0.53	-0.9
2,261,296	-		BBR_RS19890	0.58	-1.7
2,261,307	-		BBR_RS19890	0.59	-1.1
2,261,318	+		BBR_RS19890	0.60	+0.5
2,261,318	+		BBR_RS19890	0.60	+1.1
2,261,326	-		BBR_RS19890	0.61	-3.1
2,261,330	-		BBR_RS19890	0.61	+0.2
2,261,330	-		BBR_RS19890	0.61	-0.4
2,261,343	+		BBR_RS19890	0.62	-0.9
2,261,343	+		BBR_RS19890	0.62	-1.5
2,261,348	+		BBR_RS19890	0.63	-0.2
2,261,348	+		BBR_RS19890	0.63	-0.6
2,261,351	-		BBR_RS19890	0.63	+1.1
2,261,351	-		BBR_RS19890	0.63	+0.9
2,261,351	-		BBR_RS19890	0.63	-1.9
2,261,373	+		BBR_RS19890	0.65	-0.0
2,261,383	+		BBR_RS19890	0.66	-1.3
2,261,389	-		BBR_RS19890	0.67	-0.6
2,261,391	-		BBR_RS19890	0.67	+0.0
2,261,391	-		BBR_RS19890	0.67	+0.1
2,261,405	-		BBR_RS19890	0.69	-0.3
2,261,454	-		BBR_RS19890	0.74	-1.4
2,261,463	-		BBR_RS19890	0.74	+0.5
2,261,463	-		BBR_RS19890	0.74	+1.2
2,261,480	-		BBR_RS19890	0.76	+0.9
2,261,482	+		BBR_RS19890	0.76	-1.4
2,261,482	+		BBR_RS19890	0.76	-0.8
2,261,490	-		BBR_RS19890	0.77	+0.9
2,261,490	-		BBR_RS19890	0.77	-0.7
2,261,493	+		BBR_RS19890	0.78	-0.8
2,261,493	+		BBR_RS19890	0.78	-0.4
2,261,494	+		BBR_RS19890	0.78	+1.0
2,261,494	+		BBR_RS19890	0.78	-3.9
2,261,494	+		BBR_RS19890	0.78	-0.6
2,261,502	-		BBR_RS19890	0.78	+0.9
2,261,548	-		BBR_RS19890	0.83	+0.6
2,261,548	-		BBR_RS19890	0.83	+0.2
2,261,549	-		BBR_RS19890	0.83	+0.4
2,261,551	+		BBR_RS19890	0.83	-0.5
2,261,551	+		BBR_RS19890	0.83	-1.9
2,261,584	+		BBR_RS19890	0.87	-1.6
2,261,600	+		BBR_RS19890	0.88	-2.7
2,261,600	+		BBR_RS19890	0.88	+0.4
2,261,603	-		BBR_RS19890	0.89	+0.4
2,261,633	+				-0.5
2,261,641	-				-0.4
2,261,658	+				-0.5
2,261,658	+				-1.6
2,261,666	-				+0.6
2,261,666	-				+1.1
2,261,666	-				+0.8
2,261,666	-				+0.9
2,261,671	-				+0.5
2,261,690	+				+0.2
2,261,711	-				+0.5
2,261,713	+				+0.3
2,261,719	-				-1.5
2,261,741	+				-0.7
2,261,741	+				+0.5
2,261,741	+				-0.0
2,261,744	-				-0.4
2,261,761	-				-0.5
2,261,889	-				-1.7
2,261,902	+				-0.2
2,261,902	+				-1.0
2,261,902	+				-0.2
2,261,910	-				-0.3
2,261,910	-				+0.6
2,261,937	+				+0.2
2,261,937	+				+1.6
2,261,945	-				-0.8
2,261,973	-				+0.4
2,261,987	+				-0.4
2,261,987	+				+0.8
2,261,995	-				+1.2
2,261,996	-				-1.2
2,262,005	-				-0.1
2,262,012	-				-1.9
2,262,016	+				+0.2
2,262,017	-				-0.4
2,262,021	+				+0.8
2,262,044	-				+0.2
2,262,076	+				+0.5
2,262,076	+				+1.3
2,262,076	+				+0.9
2,262,084	-				+0.4
2,262,086	+				+0.8
2,262,086	+				-1.4
2,262,089	-				+0.6
2,262,119	+				+0.9
2,262,124	+				+1.3
2,262,132	-				+1.1
2,262,132	-				-0.9
2,262,135	+				+0.5
2,262,142	+				+1.0
2,262,150	-				-2.1
2,262,162	-		BBR_RS19895	0.10	-0.2
2,262,164	-		BBR_RS19895	0.11	-0.8
2,262,191	-		BBR_RS19895	0.12	+1.3
2,262,194	+		BBR_RS19895	0.13	+0.9
2,262,215	+		BBR_RS19895	0.14	+0.3
2,262,219	-		BBR_RS19895	0.14	+1.6
2,262,224	-		BBR_RS19895	0.15	+0.7
2,262,242	+		BBR_RS19895	0.16	+0.8
2,262,247	+		BBR_RS19895	0.16	+1.8
2,262,250	-		BBR_RS19895	0.16	+0.6
2,262,252	-		BBR_RS19895	0.16	+0.2
2,262,264	+		BBR_RS19895	0.17	+1.5
2,262,264	+		BBR_RS19895	0.17	+0.9
2,262,264	+		BBR_RS19895	0.17	+0.1
2,262,264	+		BBR_RS19895	0.17	-0.1
2,262,284	-		BBR_RS19895	0.19	+1.6
2,262,290	-		BBR_RS19895	0.19	-0.3
2,262,290	-		BBR_RS19895	0.19	+1.2
2,262,298	-		BBR_RS19895	0.19	-3.9
2,262,312	+		BBR_RS19895	0.20	+0.4
2,262,319	+		BBR_RS19895	0.21	+0.8
2,262,340	+		BBR_RS19895	0.22	+1.9
2,262,348	-		BBR_RS19895	0.23	+0.6
2,262,356	-		BBR_RS19895	0.23	-0.3
2,262,363	-		BBR_RS19895	0.24	-0.9
2,262,367	-		BBR_RS19895	0.24	-1.7
2,262,372	+		BBR_RS19895	0.24	-0.2
2,262,372	+		BBR_RS19895	0.24	+1.4
2,262,374	+		BBR_RS19895	0.25	+0.6
2,262,384	+		BBR_RS19895	0.25	+1.4
2,262,398	+		BBR_RS19895	0.26	+0.2
2,262,400	+		BBR_RS19895	0.26	+0.5
2,262,419	+		BBR_RS19895	0.28	+0.6
2,262,422	-		BBR_RS19895	0.28	+0.2
2,262,422	-		BBR_RS19895	0.28	-1.5
2,262,423	+		BBR_RS19895	0.28	+0.7
2,262,426	-		BBR_RS19895	0.28	+0.5
2,262,431	-		BBR_RS19895	0.28	-2.2
2,262,449	-		BBR_RS19895	0.30	+0.1
2,262,477	-		BBR_RS19895	0.31	-3.1
2,262,477	-		BBR_RS19895	0.31	+0.0
2,262,479	-		BBR_RS19895	0.32	+0.2
2,262,479	-		BBR_RS19895	0.32	+0.8
2,262,480	-		BBR_RS19895	0.32	+0.2
2,262,484	+		BBR_RS19895	0.32	+1.6
2,262,531	+		BBR_RS19895	0.35	-1.8
2,262,544	+		BBR_RS19895	0.36	+0.2
2,262,544	+		BBR_RS19895	0.36	-1.0
2,262,544	+		BBR_RS19895	0.36	+0.1
2,262,549	+		BBR_RS19895	0.36	+0.9
2,262,549	+		BBR_RS19895	0.36	+0.4
2,262,549	+		BBR_RS19895	0.36	-3.0
2,262,549	+		BBR_RS19895	0.36	+0.9
2,262,557	-		BBR_RS19895	0.37	+0.6
2,262,557	-		BBR_RS19895	0.37	-3.0
2,262,557	-		BBR_RS19895	0.37	-1.6
2,262,557	-		BBR_RS19895	0.37	+0.4
2,262,557	-		BBR_RS19895	0.37	-2.6
2,262,557	-		BBR_RS19895	0.37	+0.2
2,262,557	-		BBR_RS19895	0.37	-0.4
2,262,573	-		BBR_RS19895	0.38	-0.2
2,262,583	-		BBR_RS19895	0.38	+0.7
2,262,588	+		BBR_RS19895	0.39	+1.2
2,262,622	-		BBR_RS19895	0.41	-1.9
2,262,639	-		BBR_RS19895	0.42	+0.7
2,262,640	+		BBR_RS19895	0.42	-0.5
2,262,645	-		BBR_RS19895	0.43	+0.8
2,262,645	-		BBR_RS19895	0.43	+0.3
2,262,646	-		BBR_RS19895	0.43	-2.0
2,262,658	+		BBR_RS19895	0.43	-0.1
2,262,666	-		BBR_RS19895	0.44	-1.5
2,262,666	-		BBR_RS19895	0.44	+0.0
2,262,678	-		BBR_RS19895	0.45	+0.1
2,262,712	+		BBR_RS19895	0.47	+0.8
2,262,712	+		BBR_RS19895	0.47	+0.5
2,262,712	+		BBR_RS19895	0.47	+0.8
2,262,718	+		BBR_RS19895	0.47	+1.2
2,262,720	-		BBR_RS19895	0.48	+0.6
2,262,734	+		BBR_RS19895	0.49	+0.8
2,262,748	+		BBR_RS19895	0.49	-0.0
2,262,763	+		BBR_RS19895	0.50	+1.4
2,262,771	-		BBR_RS19895	0.51	+0.5
2,262,771	-		BBR_RS19895	0.51	-0.5
2,262,771	-		BBR_RS19895	0.51	-1.0
2,262,804	+		BBR_RS19895	0.53	-0.6
2,262,808	+		BBR_RS19895	0.53	-0.5
2,262,809	+		BBR_RS19895	0.53	+2.2
2,262,835	-		BBR_RS19895	0.55	+0.6
2,262,837	-		BBR_RS19895	0.55	-0.4
2,262,850	+		BBR_RS19895	0.56	-0.3
2,262,867	-		BBR_RS19895	0.57	+2.2
2,262,894	+		BBR_RS19895	0.59	+0.5
2,262,902	-		BBR_RS19895	0.60	-0.8
2,262,902	-		BBR_RS19895	0.60	-0.3
2,262,931	+		BBR_RS19895	0.62	+0.3
2,262,958	+		BBR_RS19895	0.63	-0.2
2,262,961	-		BBR_RS19895	0.64	+0.6
2,262,966	-		BBR_RS19895	0.64	+0.4
2,262,970	+		BBR_RS19895	0.64	+0.5
2,262,971	+		BBR_RS19895	0.64	+0.1
2,263,002	-		BBR_RS19895	0.66	+0.3
2,263,022	-		BBR_RS19895	0.68	+0.2
2,263,038	+		BBR_RS19895	0.69	+0.1
2,263,045	+		BBR_RS19895	0.69	+0.5
2,263,067	-		BBR_RS19895	0.71	-0.5
2,263,077	-		BBR_RS19895	0.71	-0.6
2,263,083	+		BBR_RS19895	0.72	+0.3
2,263,091	-		BBR_RS19895	0.72	+0.7
2,263,091	-		BBR_RS19895	0.72	+0.1
2,263,091	-		BBR_RS19895	0.72	+0.9
2,263,091	-		BBR_RS19895	0.72	-0.3
2,263,091	-		BBR_RS19895	0.72	+0.2
2,263,093	+		BBR_RS19895	0.72	+0.9
2,263,093	+		BBR_RS19895	0.72	+1.6
2,263,101	-		BBR_RS19895	0.73	+1.0
2,263,101	-		BBR_RS19895	0.73	-1.6
2,263,106	-		BBR_RS19895	0.73	-0.3
2,263,136	+		BBR_RS19895	0.75	+0.4
2,263,136	+		BBR_RS19895	0.75	-0.0
2,263,136	+		BBR_RS19895	0.75	+1.2
2,263,145	-		BBR_RS19895	0.76	-2.2
2,263,155	-		BBR_RS19895	0.77	+0.2
2,263,170	+		BBR_RS19895	0.78	+1.5
2,263,178	-		BBR_RS19895	0.78	+0.2
2,263,195	+		BBR_RS19895	0.79	+1.1
2,263,195	+		BBR_RS19895	0.79	+1.1
2,263,200	+		BBR_RS19895	0.80	+0.9
2,263,216	+		BBR_RS19895	0.81	+2.4
2,263,216	+		BBR_RS19895	0.81	-1.3
2,263,216	+		BBR_RS19895	0.81	+0.5
2,263,224	-		BBR_RS19895	0.81	-0.1
2,263,230	+		BBR_RS19895	0.82	+0.5
2,263,230	+		BBR_RS19895	0.82	+0.5
2,263,230	+		BBR_RS19895	0.82	+0.6
2,263,230	+		BBR_RS19895	0.82	+1.3
2,263,230	+		BBR_RS19895	0.82	+0.4
2,263,230	+		BBR_RS19895	0.82	+0.8
2,263,230	+		BBR_RS19895	0.82	+0.7
2,263,230	+		BBR_RS19895	0.82	+1.0
2,263,256	-		BBR_RS19895	0.83	-0.1
2,263,263	+		BBR_RS19895	0.84	+1.7
2,263,269	-		BBR_RS19895	0.84	+0.6
2,263,277	+		BBR_RS19895	0.85	+1.5
2,263,278	+		BBR_RS19895	0.85	-0.1
2,263,285	-		BBR_RS19895	0.85	-0.8
2,263,285	-		BBR_RS19895	0.85	-0.4
2,263,289	+		BBR_RS19895	0.85	+0.6
2,263,302	+		BBR_RS19895	0.86	+0.6
2,263,305	-		BBR_RS19895	0.86	-0.7
2,263,309	+		BBR_RS19895	0.87	+1.0
2,263,309	+		BBR_RS19895	0.87	-0.1
2,263,309	+		BBR_RS19895	0.87	-0.7
2,263,311	+		BBR_RS19895	0.87	-0.1
2,263,311	+		BBR_RS19895	0.87	-0.0
2,263,319	+		BBR_RS19895	0.87	-0.5
2,263,319	+		BBR_RS19895	0.87	-1.6
2,263,327	+		BBR_RS19895	0.88	+0.4
2,263,329	+		BBR_RS19895	0.88	+1.1
2,263,337	-		BBR_RS19895	0.89	+1.6
2,263,341	-		BBR_RS19895	0.89	+0.7
2,263,356	+		BBR_RS19895	0.90	-0.3
2,263,359	+				-1.6
2,263,375	+				+0.3
2,263,380	+				+0.2
2,263,383	-				+0.3
2,263,388	-				+1.7
2,263,388	-				-1.7
2,263,417	+				-2.1
2,263,450	-				+0.1
2,263,452	+				+0.3
2,263,452	+				+0.3
2,263,455	-				+0.6
2,263,455	-				-0.9
2,263,455	-				+0.7
2,263,455	-				-0.2
2,263,455	-				-0.9
2,263,455	-				+1.4
2,263,460	-				+0.2
2,263,466	-				-0.4
2,263,468	+				-0.0
2,263,475	-				+0.5
2,263,480	-				+0.6
2,263,489	+				-0.3
2,263,528	-				-0.4
2,263,544	-				+0.2
2,263,551	+				+1.0
2,263,553	+				+0.6
2,263,561	-				+1.4
2,263,561	-				+0.0
2,263,563	+				+0.2
2,263,563	+				+0.2
2,263,578	+				-0.8
2,263,611	+				-0.5
2,263,614	+				-1.1
2,263,614	+				-1.6
2,263,619	+		BBR_RS19900	0.11	-0.4
2,263,619	+		BBR_RS19900	0.11	+0.1
2,263,627	+		BBR_RS19900	0.13	-0.2
2,263,668	+		BBR_RS19900	0.27	+0.0
2,263,686	+		BBR_RS19900	0.33	+0.0
2,263,686	+		BBR_RS19900	0.33	+1.2
2,263,691	+		BBR_RS19900	0.35	-2.5
2,263,694	-		BBR_RS19900	0.36	-0.3
2,263,694	-		BBR_RS19900	0.36	+0.1
2,263,694	-		BBR_RS19900	0.36	-0.1
2,263,694	-		BBR_RS19900	0.36	-0.5
2,263,694	-		BBR_RS19900	0.36	+0.2
2,263,694	-		BBR_RS19900	0.36	+0.9
2,263,694	-		BBR_RS19900	0.36	+0.9
2,263,709	-		BBR_RS19900	0.41	+1.0
2,263,722	-		BBR_RS19900	0.46	+0.8
2,263,725	+		BBR_RS19900	0.47	-0.4
2,263,741	+		BBR_RS19900	0.52	+0.5
2,263,742	-		BBR_RS19900	0.52	-0.3
2,263,742	-		BBR_RS19900	0.52	+0.8
2,263,770	-		BBR_RS19900	0.62	-0.1
2,263,823	+		BBR_RS19900	0.80	-0.7
2,263,828	+		BBR_RS19900	0.82	-0.1
2,263,828	+		BBR_RS19900	0.82	+1.0
2,263,828	+		BBR_RS19900	0.82	-0.0
2,263,831	-		BBR_RS19900	0.83	+0.6
2,263,836	-		BBR_RS19900	0.84	+1.3
2,263,836	-		BBR_RS19900	0.84	+1.3
2,263,836	-		BBR_RS19900	0.84	-0.7
2,263,882	-				-0.4
2,263,884	-				+0.9
2,263,911	-				-0.4
2,263,914	+				+0.6
2,263,919	+				+0.6
2,263,919	+				+0.1
2,263,919	-				-0.2
2,263,928	+				+0.5
2,263,951	+				+0.9
2,264,011	+				+0.8
2,264,036	+				+0.1
2,264,036	+				-0.7
2,264,036	+				-0.4
2,264,036	+				+0.6
2,264,044	+				+1.1
2,264,044	+				-2.5
2,264,044	-				-1.5
2,264,044	-				-1.5
2,264,044	-				-1.0
2,264,065	+				+0.9
2,264,065	+				+0.0
2,264,066	-				+0.5
2,264,066	-				+0.9
2,264,090	-				+0.7
2,264,101	-				-0.9
2,264,117	-				+0.1
2,264,208	+				+0.7
2,264,209	-				+0.5
2,264,243	-				+0.2
2,264,243	-				+0.8
2,264,251	+				+0.3
2,264,251	+				+0.7
2,264,252	+				+1.1
2,264,254	+				+1.3
2,264,256	+				+0.3
2,264,257	-				+0.3
2,264,262	-				+1.0
2,264,262	-				+1.0
2,264,264	-				+0.9
2,264,264	-				+0.4
2,264,267	+				+0.7
2,264,319	+				+0.2
2,264,320	+				+0.7
2,264,320	+				-0.2
2,264,327	+				+0.5
2,264,327	+				+0.2
2,264,330	-				+0.1
2,264,346	+				+1.0
2,264,346	+				+0.3
2,264,369	+				-1.0
2,264,369	+				+0.9
2,264,369	+				+0.7
2,264,374	+				+0.4
2,264,377	-				-0.4
2,264,377	-				-0.1
2,264,377	-				-0.1
2,264,382	-				+0.9
2,264,404	+				+1.1
2,264,411	-				-0.4
2,264,412	-				+0.6
2,264,412	-				+0.6
2,264,412	-				+0.8
2,264,412	-				+1.0
2,264,422	+				+1.9
2,264,463	-				+1.9