Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20135 and ABZR86_RS20140 are separated by 15 nucleotides ABZR86_RS20140 and ABZR86_RS20145 overlap by 4 nucleotides ABZR86_RS20145 and ABZR86_RS20150 are separated by 125 nucleotides ABZR86_RS20150 and ABZR86_RS20155 are separated by 367 nucleotides
ABZR86_RS20135: ABZR86_RS20135 - flagellar filament capping protein FliD, at 521,595 to 522,989
_RS20135
ABZR86_RS20140: ABZR86_RS20140 - flagellar export chaperone FliS, at 523,005 to 523,424
_RS20140
ABZR86_RS20145: ABZR86_RS20145 - flagellar protein FliT, at 523,421 to 523,702
_RS20145
ABZR86_RS20150: ABZR86_RS20150 - PilZ domain-containing protein, at 523,828 to 524,406
_RS20150
ABZR86_RS20155: ABZR86_RS20155 - sigma-54 dependent transcriptional regulator, at 524,774 to 526,240
_RS20155
Position (kb) 523
524
525 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 522.886 kb on - strand at 522.932 kb on + strand at 522.933 kb on - strand at 522.933 kb on - strand at 522.945 kb on + strand at 522.945 kb on + strand at 522.945 kb on + strand at 522.987 kb on + strand at 522.987 kb on + strand at 522.988 kb on - strand at 523.001 kb on + strand at 523.001 kb on + strand at 523.001 kb on + strand at 523.002 kb on - strand at 523.002 kb on - strand at 523.002 kb on - strand at 523.002 kb on - strand at 523.033 kb on - strand at 523.266 kb on + strand, within ABZR86_RS20140 at 523.272 kb on + strand, within ABZR86_RS20140 at 523.272 kb on + strand, within ABZR86_RS20140 at 523.273 kb on - strand, within ABZR86_RS20140 at 523.273 kb on - strand, within ABZR86_RS20140 at 523.592 kb on + strand, within ABZR86_RS20145 at 523.592 kb on + strand, within ABZR86_RS20145 at 523.592 kb on + strand, within ABZR86_RS20145 at 523.688 kb on + strand at 523.689 kb on - strand at 523.690 kb on + strand at 523.690 kb on + strand at 523.690 kb on + strand at 523.691 kb on - strand at 523.691 kb on - strand at 523.710 kb on + strand at 523.711 kb on - strand at 523.716 kb on + strand at 523.716 kb on + strand at 523.716 kb on + strand at 523.717 kb on - strand at 523.717 kb on - strand at 523.717 kb on - strand at 523.717 kb on - strand at 523.717 kb on - strand at 523.803 kb on + strand at 523.803 kb on + strand at 523.804 kb on - strand at 524.018 kb on + strand, within ABZR86_RS20150 at 524.018 kb on + strand, within ABZR86_RS20150 at 524.556 kb on - strand at 524.556 kb on - strand at 524.556 kb on - strand at 524.930 kb on + strand, within ABZR86_RS20155 at 524.931 kb on - strand, within ABZR86_RS20155 at 524.931 kb on - strand, within ABZR86_RS20155 at 524.931 kb on - strand, within ABZR86_RS20155
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 522,886 - -0.7 522,932 + -0.6 522,933 - -0.3 522,933 - +0.1 522,945 + -0.7 522,945 + +0.6 522,945 + +0.3 522,987 + +0.2 522,987 + -0.2 522,988 - +0.7 523,001 + -1.8 523,001 + +0.3 523,001 + +0.6 523,002 - -0.4 523,002 - -0.4 523,002 - +0.2 523,002 - +0.5 523,033 - +0.6 523,266 + ABZR86_RS20140 0.62 -0.4 523,272 + ABZR86_RS20140 0.64 +0.1 523,272 + ABZR86_RS20140 0.64 -0.2 523,273 - ABZR86_RS20140 0.64 +0.0 523,273 - ABZR86_RS20140 0.64 +0.7 523,592 + ABZR86_RS20145 0.61 +0.2 523,592 + ABZR86_RS20145 0.61 +0.3 523,592 + ABZR86_RS20145 0.61 +0.4 523,688 + +0.1 523,689 - +0.3 523,690 + -0.1 523,690 + +0.6 523,690 + +0.1 523,691 - +0.4 523,691 - -0.1 523,710 + +2.1 523,711 - +1.3 523,716 + +0.2 523,716 + +0.8 523,716 + -0.4 523,717 - +0.9 523,717 - +0.2 523,717 - -0.3 523,717 - -0.5 523,717 - +0.2 523,803 + +0.4 523,803 + +0.3 523,804 - +0.1 524,018 + ABZR86_RS20150 0.33 -4.8 524,018 + ABZR86_RS20150 0.33 -0.4 524,556 - -0.2 524,556 - +0.8 524,556 - +0.2 524,930 + ABZR86_RS20155 0.11 +0.8 524,931 - ABZR86_RS20155 0.11 -0.5 524,931 - ABZR86_RS20155 0.11 +0.1 524,931 - ABZR86_RS20155 0.11 +0.7
Or see this region's nucleotide sequence