Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS12070

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS12060 and ABZR86_RS12065 are separated by 5 nucleotidesABZR86_RS12065 and ABZR86_RS12070 are separated by 110 nucleotidesABZR86_RS12070 and ABZR86_RS12075 overlap by 4 nucleotidesABZR86_RS12075 and ABZR86_RS12080 are separated by 278 nucleotides ABZR86_RS12060: ABZR86_RS12060 - HAD family hydrolase, at 2,694,590 to 2,695,294 _RS12060 ABZR86_RS12065: ABZR86_RS12065 - indole-3-glycerol phosphate synthase TrpC, at 2,695,300 to 2,696,094 _RS12065 ABZR86_RS12070: ABZR86_RS12070 - anthranilate phosphoribosyltransferase, at 2,696,205 to 2,697,260 _RS12070 ABZR86_RS12075: ABZR86_RS12075 - aminodeoxychorismate/anthranilate synthase component II, at 2,697,257 to 2,697,853 _RS12075 ABZR86_RS12080: ABZR86_RS12080 - hypothetical protein, at 2,698,132 to 2,698,338 _RS12080 Position (kb) 2696 2697 2698Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2695.294 kb on + strandat 2695.294 kb on + strandat 2695.294 kb on + strandat 2695.295 kb on - strandat 2695.295 kb on - strandat 2695.295 kb on - strandat 2695.295 kb on - strandat 2695.301 kb on + strandat 2695.301 kb on + strandat 2695.301 kb on + strandat 2695.301 kb on + strandat 2695.302 kb on - strandat 2695.302 kb on - strandat 2695.302 kb on - strandat 2695.454 kb on + strand, within ABZR86_RS12065at 2695.454 kb on + strand, within ABZR86_RS12065at 2695.454 kb on + strand, within ABZR86_RS12065at 2695.455 kb on - strand, within ABZR86_RS12065at 2695.455 kb on - strand, within ABZR86_RS12065at 2695.455 kb on - strand, within ABZR86_RS12065at 2695.455 kb on - strand, within ABZR86_RS12065at 2695.703 kb on + strand, within ABZR86_RS12065at 2695.703 kb on + strand, within ABZR86_RS12065at 2695.703 kb on + strand, within ABZR86_RS12065at 2695.704 kb on - strand, within ABZR86_RS12065at 2695.847 kb on + strand, within ABZR86_RS12065at 2696.153 kb on + strandat 2696.206 kb on + strandat 2696.207 kb on - strandat 2696.207 kb on - strandat 2696.297 kb on + strandat 2696.332 kb on + strand, within ABZR86_RS12070at 2696.332 kb on + strand, within ABZR86_RS12070at 2696.333 kb on - strand, within ABZR86_RS12070at 2696.491 kb on + strand, within ABZR86_RS12070at 2696.492 kb on - strand, within ABZR86_RS12070at 2696.957 kb on + strand, within ABZR86_RS12070at 2696.957 kb on + strand, within ABZR86_RS12070at 2696.957 kb on + strand, within ABZR86_RS12070at 2696.957 kb on + strand, within ABZR86_RS12070at 2697.831 kb on + strandat 2697.831 kb on + strandat 2697.832 kb on - strandat 2697.832 kb on - strandat 2697.832 kb on - strandat 2697.832 kb on - strandat 2697.944 kb on + strandat 2697.944 kb on + strandat 2698.187 kb on - strand, within ABZR86_RS12080at 2698.187 kb on - strand, within ABZR86_RS12080at 2698.187 kb on - strand, within ABZR86_RS12080

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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2,695,294 + -0.4
2,695,294 + +0.2
2,695,294 + +0.4
2,695,295 - +0.1
2,695,295 - -0.4
2,695,295 - +0.7
2,695,295 - +0.1
2,695,301 + +0.4
2,695,301 + -0.3
2,695,301 + -0.7
2,695,301 + +0.2
2,695,302 - -0.6
2,695,302 - +1.1
2,695,302 - -0.0
2,695,454 + ABZR86_RS12065 0.19 -2.8
2,695,454 + ABZR86_RS12065 0.19 -3.7
2,695,454 + ABZR86_RS12065 0.19 -2.9
2,695,455 - ABZR86_RS12065 0.19 -3.2
2,695,455 - ABZR86_RS12065 0.19 -4.6
2,695,455 - ABZR86_RS12065 0.19 -2.1
2,695,455 - ABZR86_RS12065 0.19 -3.7
2,695,703 + ABZR86_RS12065 0.51 -3.1
2,695,703 + ABZR86_RS12065 0.51 -2.7
2,695,703 + ABZR86_RS12065 0.51 -3.0
2,695,704 - ABZR86_RS12065 0.51 -2.1
2,695,847 + ABZR86_RS12065 0.69 -4.4
2,696,153 + +0.5
2,696,206 + +0.0
2,696,207 - -0.3
2,696,207 - -0.3
2,696,297 + -5.6
2,696,332 + ABZR86_RS12070 0.12 -4.7
2,696,332 + ABZR86_RS12070 0.12 -5.2
2,696,333 - ABZR86_RS12070 0.12 -3.9
2,696,491 + ABZR86_RS12070 0.27 -4.2
2,696,492 - ABZR86_RS12070 0.27 -4.2
2,696,957 + ABZR86_RS12070 0.71 -4.1
2,696,957 + ABZR86_RS12070 0.71 -4.1
2,696,957 + ABZR86_RS12070 0.71 -3.8
2,696,957 + ABZR86_RS12070 0.71 -5.4
2,697,831 + -4.3
2,697,831 + -4.1
2,697,832 - -5.7
2,697,832 - -2.0
2,697,832 - -2.7
2,697,832 - -2.2
2,697,944 + +0.2
2,697,944 + -3.0
2,698,187 - ABZR86_RS12080 0.27 -0.3
2,698,187 - ABZR86_RS12080 0.27 -0.5
2,698,187 - ABZR86_RS12080 0.27 -0.7

Or see this region's nucleotide sequence