Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS12060 and ABZR86_RS12065 are separated by 5 nucleotides ABZR86_RS12065 and ABZR86_RS12070 are separated by 110 nucleotides ABZR86_RS12070 and ABZR86_RS12075 overlap by 4 nucleotides ABZR86_RS12075 and ABZR86_RS12080 are separated by 278 nucleotides
ABZR86_RS12060: ABZR86_RS12060 - HAD family hydrolase, at 2,694,590 to 2,695,294
_RS12060
ABZR86_RS12065: ABZR86_RS12065 - indole-3-glycerol phosphate synthase TrpC, at 2,695,300 to 2,696,094
_RS12065
ABZR86_RS12070: ABZR86_RS12070 - anthranilate phosphoribosyltransferase, at 2,696,205 to 2,697,260
_RS12070
ABZR86_RS12075: ABZR86_RS12075 - aminodeoxychorismate/anthranilate synthase component II, at 2,697,257 to 2,697,853
_RS12075
ABZR86_RS12080: ABZR86_RS12080 - hypothetical protein, at 2,698,132 to 2,698,338
_RS12080
Position (kb)
2696
2697
2698 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2695.294 kb on + strand at 2695.294 kb on + strand at 2695.294 kb on + strand at 2695.295 kb on - strand at 2695.295 kb on - strand at 2695.295 kb on - strand at 2695.295 kb on - strand at 2695.301 kb on + strand at 2695.301 kb on + strand at 2695.301 kb on + strand at 2695.301 kb on + strand at 2695.302 kb on - strand at 2695.302 kb on - strand at 2695.302 kb on - strand at 2695.454 kb on + strand, within ABZR86_RS12065 at 2695.454 kb on + strand, within ABZR86_RS12065 at 2695.454 kb on + strand, within ABZR86_RS12065 at 2695.455 kb on - strand, within ABZR86_RS12065 at 2695.455 kb on - strand, within ABZR86_RS12065 at 2695.455 kb on - strand, within ABZR86_RS12065 at 2695.455 kb on - strand, within ABZR86_RS12065 at 2695.703 kb on + strand, within ABZR86_RS12065 at 2695.703 kb on + strand, within ABZR86_RS12065 at 2695.703 kb on + strand, within ABZR86_RS12065 at 2695.704 kb on - strand, within ABZR86_RS12065 at 2695.847 kb on + strand, within ABZR86_RS12065 at 2696.153 kb on + strand at 2696.206 kb on + strand at 2696.207 kb on - strand at 2696.207 kb on - strand at 2696.297 kb on + strand at 2696.332 kb on + strand, within ABZR86_RS12070 at 2696.332 kb on + strand, within ABZR86_RS12070 at 2696.333 kb on - strand, within ABZR86_RS12070 at 2696.491 kb on + strand, within ABZR86_RS12070 at 2696.492 kb on - strand, within ABZR86_RS12070 at 2696.957 kb on + strand, within ABZR86_RS12070 at 2696.957 kb on + strand, within ABZR86_RS12070 at 2696.957 kb on + strand, within ABZR86_RS12070 at 2696.957 kb on + strand, within ABZR86_RS12070 at 2697.831 kb on + strand at 2697.831 kb on + strand at 2697.832 kb on - strand at 2697.832 kb on - strand at 2697.832 kb on - strand at 2697.832 kb on - strand at 2697.944 kb on + strand at 2697.944 kb on + strand at 2698.187 kb on - strand, within ABZR86_RS12080 at 2698.187 kb on - strand, within ABZR86_RS12080 at 2698.187 kb on - strand, within ABZR86_RS12080
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 2,695,294 + -0.4 2,695,294 + +0.2 2,695,294 + +0.4 2,695,295 - +0.1 2,695,295 - -0.4 2,695,295 - +0.7 2,695,295 - +0.1 2,695,301 + +0.4 2,695,301 + -0.3 2,695,301 + -0.7 2,695,301 + +0.2 2,695,302 - -0.6 2,695,302 - +1.1 2,695,302 - -0.0 2,695,454 + ABZR86_RS12065 0.19 -2.8 2,695,454 + ABZR86_RS12065 0.19 -3.7 2,695,454 + ABZR86_RS12065 0.19 -2.9 2,695,455 - ABZR86_RS12065 0.19 -3.2 2,695,455 - ABZR86_RS12065 0.19 -4.6 2,695,455 - ABZR86_RS12065 0.19 -2.1 2,695,455 - ABZR86_RS12065 0.19 -3.7 2,695,703 + ABZR86_RS12065 0.51 -3.1 2,695,703 + ABZR86_RS12065 0.51 -2.7 2,695,703 + ABZR86_RS12065 0.51 -3.0 2,695,704 - ABZR86_RS12065 0.51 -2.1 2,695,847 + ABZR86_RS12065 0.69 -4.4 2,696,153 + +0.5 2,696,206 + +0.0 2,696,207 - -0.3 2,696,207 - -0.3 2,696,297 + -5.6 2,696,332 + ABZR86_RS12070 0.12 -4.7 2,696,332 + ABZR86_RS12070 0.12 -5.2 2,696,333 - ABZR86_RS12070 0.12 -3.9 2,696,491 + ABZR86_RS12070 0.27 -4.2 2,696,492 - ABZR86_RS12070 0.27 -4.2 2,696,957 + ABZR86_RS12070 0.71 -4.1 2,696,957 + ABZR86_RS12070 0.71 -4.1 2,696,957 + ABZR86_RS12070 0.71 -3.8 2,696,957 + ABZR86_RS12070 0.71 -5.4 2,697,831 + -4.3 2,697,831 + -4.1 2,697,832 - -5.7 2,697,832 - -2.0 2,697,832 - -2.7 2,697,832 - -2.2 2,697,944 + +0.2 2,697,944 + -3.0 2,698,187 - ABZR86_RS12080 0.27 -0.3 2,698,187 - ABZR86_RS12080 0.27 -0.5 2,698,187 - ABZR86_RS12080 0.27 -0.7
Or see this region's nucleotide sequence