Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08005 and ABZR86_RS08010 are separated by 80 nucleotides ABZR86_RS08010 and ABZR86_RS08015 overlap by 4 nucleotides ABZR86_RS08015 and ABZR86_RS08020 are separated by 113 nucleotides
ABZR86_RS08005: ABZR86_RS08005 - LysR family transcriptional regulator, at 1,789,055 to 1,789,939
_RS08005
ABZR86_RS08010: ABZR86_RS08010 - phosphoribosylanthranilate isomerase, at 1,790,020 to 1,790,634
_RS08010
ABZR86_RS08015: ABZR86_RS08015 - tRNA pseudouridine(38-40) synthase TruA, at 1,790,631 to 1,791,398
_RS08015
ABZR86_RS08020: ABZR86_RS08020 - FimV/HubP family polar landmark protein, at 1,791,512 to 1,793,887
_RS08020
Position (kb)
1790
1791 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1789.023 kb on + strand at 1789.024 kb on - strand at 1789.034 kb on + strand at 1789.733 kb on + strand, within ABZR86_RS08005 at 1789.733 kb on + strand, within ABZR86_RS08005 at 1789.733 kb on + strand, within ABZR86_RS08005 at 1789.733 kb on + strand, within ABZR86_RS08005 at 1789.733 kb on + strand, within ABZR86_RS08005 at 1789.736 kb on + strand, within ABZR86_RS08005 at 1789.736 kb on + strand, within ABZR86_RS08005 at 1789.736 kb on + strand, within ABZR86_RS08005 at 1789.737 kb on - strand, within ABZR86_RS08005 at 1789.737 kb on - strand, within ABZR86_RS08005 at 1789.737 kb on - strand, within ABZR86_RS08005 at 1789.937 kb on + strand at 1789.938 kb on - strand at 1789.980 kb on + strand at 1789.980 kb on + strand at 1789.980 kb on + strand at 1790.021 kb on + strand at 1790.021 kb on + strand at 1790.021 kb on + strand at 1790.021 kb on + strand at 1790.022 kb on - strand at 1790.022 kb on - strand at 1790.342 kb on + strand, within ABZR86_RS08010 at 1790.435 kb on + strand, within ABZR86_RS08010 at 1790.435 kb on + strand, within ABZR86_RS08010 at 1790.435 kb on + strand, within ABZR86_RS08010 at 1790.435 kb on + strand, within ABZR86_RS08010 at 1790.436 kb on - strand, within ABZR86_RS08010 at 1790.436 kb on - strand, within ABZR86_RS08010 at 1790.436 kb on - strand, within ABZR86_RS08010 at 1790.436 kb on - strand, within ABZR86_RS08010 at 1790.671 kb on + strand at 1791.022 kb on + strand, within ABZR86_RS08015 at 1791.023 kb on - strand, within ABZR86_RS08015 at 1791.374 kb on - strand at 1791.417 kb on - strand at 1791.431 kb on + strand at 1791.432 kb on - strand at 1791.432 kb on - strand at 1791.432 kb on - strand at 1791.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 1,789,023 + -1.4 1,789,024 - +0.2 1,789,034 + +0.7 1,789,733 + ABZR86_RS08005 0.77 +0.2 1,789,733 + ABZR86_RS08005 0.77 -0.4 1,789,733 + ABZR86_RS08005 0.77 +0.1 1,789,733 + ABZR86_RS08005 0.77 -0.5 1,789,733 + ABZR86_RS08005 0.77 -0.2 1,789,736 + ABZR86_RS08005 0.77 +1.2 1,789,736 + ABZR86_RS08005 0.77 +0.6 1,789,736 + ABZR86_RS08005 0.77 -0.6 1,789,737 - ABZR86_RS08005 0.77 -1.5 1,789,737 - ABZR86_RS08005 0.77 +0.1 1,789,737 - ABZR86_RS08005 0.77 +0.3 1,789,937 + -0.2 1,789,938 - +1.4 1,789,980 + -0.2 1,789,980 + -0.2 1,789,980 + +0.2 1,790,021 + -0.9 1,790,021 + +0.6 1,790,021 + -0.3 1,790,021 + -0.7 1,790,022 - +0.5 1,790,022 - +0.4 1,790,342 + ABZR86_RS08010 0.52 -2.3 1,790,435 + ABZR86_RS08010 0.67 -3.2 1,790,435 + ABZR86_RS08010 0.67 -3.8 1,790,435 + ABZR86_RS08010 0.67 -2.7 1,790,435 + ABZR86_RS08010 0.67 -2.7 1,790,436 - ABZR86_RS08010 0.68 -0.2 1,790,436 - ABZR86_RS08010 0.68 -2.7 1,790,436 - ABZR86_RS08010 0.68 -4.4 1,790,436 - ABZR86_RS08010 0.68 -4.7 1,790,671 + -0.2 1,791,022 + ABZR86_RS08015 0.51 -2.6 1,791,023 - ABZR86_RS08015 0.51 -0.7 1,791,374 - -2.3 1,791,417 - -0.6 1,791,431 + +0.6 1,791,432 - +0.4 1,791,432 - +0.2 1,791,432 - +0.5 1,791,625 - +0.3
Or see this region's nucleotide sequence