Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06705

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06695 and ABZR86_RS06700 are separated by 165 nucleotidesABZR86_RS06700 and ABZR86_RS06705 are separated by 12 nucleotidesABZR86_RS06705 and ABZR86_RS06710 overlap by 7 nucleotidesABZR86_RS06710 and ABZR86_RS06715 overlap by 4 nucleotides ABZR86_RS06695: ABZR86_RS06695 - C13 family peptidase, at 1,474,925 to 1,475,959 _RS06695 ABZR86_RS06700: ABZR86_RS06700 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE, at 1,476,125 to 1,476,754 _RS06700 ABZR86_RS06705: ABZR86_RS06705 - imidazole glycerol phosphate synthase subunit HisF, at 1,476,767 to 1,477,537 _RS06705 ABZR86_RS06710: ABZR86_RS06710 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,477,531 to 1,478,259 _RS06710 ABZR86_RS06715: ABZR86_RS06715 - imidazole glycerol phosphate synthase subunit HisH, at 1,478,256 to 1,478,846 _RS06715 Position (kb) 1476 1477 1478Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1476.071 kb on + strandat 1476.102 kb on + strandat 1476.123 kb on + strandat 1476.124 kb on - strandat 1476.172 kb on + strandat 1476.343 kb on - strand, within ABZR86_RS06700at 1476.343 kb on - strand, within ABZR86_RS06700at 1476.343 kb on - strand, within ABZR86_RS06700at 1476.644 kb on - strand, within ABZR86_RS06700at 1476.645 kb on + strand, within ABZR86_RS06700at 1476.645 kb on + strand, within ABZR86_RS06700at 1476.646 kb on - strand, within ABZR86_RS06700at 1476.801 kb on + strandat 1476.801 kb on + strandat 1476.802 kb on - strandat 1476.978 kb on + strand, within ABZR86_RS06705at 1477.389 kb on + strand, within ABZR86_RS06705at 1477.389 kb on + strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705at 1477.390 kb on - strand, within ABZR86_RS06705at 1477.778 kb on + strand, within ABZR86_RS06710at 1477.778 kb on + strand, within ABZR86_RS06710at 1477.779 kb on - strand, within ABZR86_RS06710at 1478.171 kb on + strand, within ABZR86_RS06710at 1478.171 kb on + strand, within ABZR86_RS06710at 1478.172 kb on - strand, within ABZR86_RS06710at 1478.172 kb on - strand, within ABZR86_RS06710at 1478.172 kb on - strand, within ABZR86_RS06710at 1478.172 kb on - strand, within ABZR86_RS06710at 1478.259 kb on + strandat 1478.259 kb on + strandat 1478.259 kb on + strandat 1478.259 kb on + strandat 1478.259 kb on + strandat 1478.260 kb on - strandat 1478.260 kb on - strandat 1478.260 kb on - strandat 1478.260 kb on - strandat 1478.260 kb on - strandat 1478.413 kb on + strand, within ABZR86_RS06715at 1478.413 kb on + strand, within ABZR86_RS06715at 1478.413 kb on + strand, within ABZR86_RS06715at 1478.413 kb on + strand, within ABZR86_RS06715at 1478.413 kb on + strand, within ABZR86_RS06715at 1478.413 kb on + strand, within ABZR86_RS06715at 1478.413 kb on + strand, within ABZR86_RS06715at 1478.414 kb on - strand, within ABZR86_RS06715at 1478.414 kb on - strand, within ABZR86_RS06715at 1478.414 kb on - strand, within ABZR86_RS06715at 1478.414 kb on - strand, within ABZR86_RS06715at 1478.428 kb on + strand, within ABZR86_RS06715at 1478.428 kb on + strand, within ABZR86_RS06715

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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1,476,071 + +0.8
1,476,102 + +0.1
1,476,123 + -0.5
1,476,124 - +0.8
1,476,172 + -3.2
1,476,343 - ABZR86_RS06700 0.35 -4.0
1,476,343 - ABZR86_RS06700 0.35 +0.8
1,476,343 - ABZR86_RS06700 0.35 -3.2
1,476,644 - ABZR86_RS06700 0.82 -3.8
1,476,645 + ABZR86_RS06700 0.83 -3.4
1,476,645 + ABZR86_RS06700 0.83 -3.9
1,476,646 - ABZR86_RS06700 0.83 -2.0
1,476,801 + -4.4
1,476,801 + -4.4
1,476,802 - -1.4
1,476,978 + ABZR86_RS06705 0.27 -4.2
1,477,389 + ABZR86_RS06705 0.81 -1.2
1,477,389 + ABZR86_RS06705 0.81 -2.9
1,477,390 - ABZR86_RS06705 0.81 -2.2
1,477,390 - ABZR86_RS06705 0.81 -2.1
1,477,390 - ABZR86_RS06705 0.81 -3.2
1,477,390 - ABZR86_RS06705 0.81 -4.1
1,477,390 - ABZR86_RS06705 0.81 -2.3
1,477,778 + ABZR86_RS06710 0.34 -2.3
1,477,778 + ABZR86_RS06710 0.34 -2.9
1,477,779 - ABZR86_RS06710 0.34 -5.4
1,478,171 + ABZR86_RS06710 0.88 -2.5
1,478,171 + ABZR86_RS06710 0.88 -3.5
1,478,172 - ABZR86_RS06710 0.88 -3.6
1,478,172 - ABZR86_RS06710 0.88 -4.3
1,478,172 - ABZR86_RS06710 0.88 -3.1
1,478,172 - ABZR86_RS06710 0.88 -4.8
1,478,259 + -4.4
1,478,259 + -3.1
1,478,259 + -4.4
1,478,259 + -2.8
1,478,259 + -3.3
1,478,260 - -2.3
1,478,260 - -4.2
1,478,260 - -1.5
1,478,260 - -0.4
1,478,260 - -4.2
1,478,413 + ABZR86_RS06715 0.27 -3.2
1,478,413 + ABZR86_RS06715 0.27 -3.8
1,478,413 + ABZR86_RS06715 0.27 -3.8
1,478,413 + ABZR86_RS06715 0.27 -2.4
1,478,413 + ABZR86_RS06715 0.27 -3.0
1,478,413 + ABZR86_RS06715 0.27 -4.5
1,478,413 + ABZR86_RS06715 0.27 -3.3
1,478,414 - ABZR86_RS06715 0.27 -2.0
1,478,414 - ABZR86_RS06715 0.27 -2.5
1,478,414 - ABZR86_RS06715 0.27 -2.9
1,478,414 - ABZR86_RS06715 0.27 +0.8
1,478,428 + ABZR86_RS06715 0.29 -5.0
1,478,428 + ABZR86_RS06715 0.29 -2.9

Or see this region's nucleotide sequence