Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05040

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05030 and ABZR86_RS05035 are separated by 132 nucleotidesABZR86_RS05035 and ABZR86_RS05040 overlap by 4 nucleotidesABZR86_RS05040 and ABZR86_RS05045 are separated by 11 nucleotides ABZR86_RS05030: ABZR86_RS05030 - filamentous haemagglutinin family protein, at 1,123,959 to 1,137,062 _RS05030 ABZR86_RS05035: ABZR86_RS05035 - hypothetical protein, at 1,137,195 to 1,137,542 _RS05035 ABZR86_RS05040: ABZR86_RS05040 - hypothetical protein, at 1,137,539 to 1,138,156 _RS05040 ABZR86_RS05045: ABZR86_RS05045 - putative porin, at 1,138,168 to 1,139,913 _RS05045 Position (kb) 1137 1138 1139Strain fitness (log2 ratio) -1 0 1at 1137.076 kb on + strandat 1137.077 kb on - strandat 1137.163 kb on + strandat 1137.164 kb on - strandat 1137.182 kb on - strandat 1137.182 kb on - strandat 1137.182 kb on - strandat 1137.182 kb on - strandat 1137.182 kb on - strandat 1137.185 kb on + strandat 1137.186 kb on - strandat 1137.186 kb on - strandat 1137.235 kb on + strand, within ABZR86_RS05035at 1137.235 kb on + strand, within ABZR86_RS05035at 1137.235 kb on + strand, within ABZR86_RS05035at 1137.313 kb on + strand, within ABZR86_RS05035at 1137.314 kb on - strand, within ABZR86_RS05035at 1137.314 kb on - strand, within ABZR86_RS05035at 1137.314 kb on - strand, within ABZR86_RS05035at 1137.424 kb on + strand, within ABZR86_RS05035at 1137.424 kb on + strand, within ABZR86_RS05035at 1137.424 kb on + strand, within ABZR86_RS05035at 1137.424 kb on + strand, within ABZR86_RS05035at 1137.424 kb on + strand, within ABZR86_RS05035at 1137.424 kb on + strand, within ABZR86_RS05035at 1137.425 kb on - strand, within ABZR86_RS05035at 1137.425 kb on - strand, within ABZR86_RS05035at 1137.425 kb on - strand, within ABZR86_RS05035at 1137.425 kb on - strand, within ABZR86_RS05035at 1137.425 kb on - strand, within ABZR86_RS05035at 1137.425 kb on - strand, within ABZR86_RS05035at 1137.453 kb on + strand, within ABZR86_RS05035at 1137.453 kb on + strand, within ABZR86_RS05035at 1137.454 kb on - strand, within ABZR86_RS05035at 1137.454 kb on - strand, within ABZR86_RS05035at 1137.567 kb on + strandat 1137.568 kb on - strandat 1137.579 kb on + strandat 1137.580 kb on - strandat 1137.580 kb on - strandat 1137.580 kb on - strandat 1137.594 kb on + strandat 1137.676 kb on + strand, within ABZR86_RS05040at 1137.684 kb on + strand, within ABZR86_RS05040at 1137.684 kb on + strand, within ABZR86_RS05040at 1137.684 kb on + strand, within ABZR86_RS05040at 1137.684 kb on + strand, within ABZR86_RS05040at 1137.684 kb on + strand, within ABZR86_RS05040at 1137.685 kb on - strand, within ABZR86_RS05040at 1137.685 kb on - strand, within ABZR86_RS05040at 1137.685 kb on - strand, within ABZR86_RS05040at 1137.714 kb on + strand, within ABZR86_RS05040at 1137.715 kb on - strand, within ABZR86_RS05040at 1137.715 kb on - strand, within ABZR86_RS05040at 1137.715 kb on - strand, within ABZR86_RS05040at 1138.139 kb on - strandat 1138.139 kb on - strandat 1138.139 kb on - strandat 1138.142 kb on + strandat 1138.245 kb on - strandat 1138.280 kb on + strandat 1138.373 kb on + strand, within ABZR86_RS05045at 1138.374 kb on - strand, within ABZR86_RS05045at 1138.374 kb on - strand, within ABZR86_RS05045at 1138.374 kb on - strand, within ABZR86_RS05045at 1138.374 kb on - strand, within ABZR86_RS05045at 1138.470 kb on - strand, within ABZR86_RS05045at 1138.470 kb on - strand, within ABZR86_RS05045at 1138.506 kb on - strand, within ABZR86_RS05045at 1138.506 kb on - strand, within ABZR86_RS05045at 1138.506 kb on - strand, within ABZR86_RS05045at 1138.565 kb on + strand, within ABZR86_RS05045at 1138.565 kb on + strand, within ABZR86_RS05045at 1138.566 kb on - strand, within ABZR86_RS05045at 1138.583 kb on + strand, within ABZR86_RS05045at 1138.608 kb on + strand, within ABZR86_RS05045at 1138.656 kb on - strand, within ABZR86_RS05045at 1138.692 kb on - strand, within ABZR86_RS05045at 1138.761 kb on - strand, within ABZR86_RS05045at 1138.847 kb on + strand, within ABZR86_RS05045at 1138.850 kb on + strand, within ABZR86_RS05045at 1138.850 kb on + strand, within ABZR86_RS05045at 1138.851 kb on - strand, within ABZR86_RS05045at 1138.853 kb on + strand, within ABZR86_RS05045at 1138.857 kb on - strand, within ABZR86_RS05045at 1138.991 kb on + strand, within ABZR86_RS05045at 1139.094 kb on - strand, within ABZR86_RS05045

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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1,137,076 + +0.4
1,137,077 - -0.0
1,137,163 + -0.6
1,137,164 - +0.0
1,137,182 - -0.2
1,137,182 - -0.5
1,137,182 - -0.6
1,137,182 - +0.2
1,137,182 - -0.0
1,137,185 + -0.0
1,137,186 - -0.6
1,137,186 - +0.8
1,137,235 + ABZR86_RS05035 0.11 -0.3
1,137,235 + ABZR86_RS05035 0.11 -1.5
1,137,235 + ABZR86_RS05035 0.11 +0.6
1,137,313 + ABZR86_RS05035 0.34 +0.6
1,137,314 - ABZR86_RS05035 0.34 -0.2
1,137,314 - ABZR86_RS05035 0.34 -0.3
1,137,314 - ABZR86_RS05035 0.34 +0.2
1,137,424 + ABZR86_RS05035 0.66 +0.1
1,137,424 + ABZR86_RS05035 0.66 -0.6
1,137,424 + ABZR86_RS05035 0.66 -0.5
1,137,424 + ABZR86_RS05035 0.66 -0.0
1,137,424 + ABZR86_RS05035 0.66 +0.2
1,137,424 + ABZR86_RS05035 0.66 -0.6
1,137,425 - ABZR86_RS05035 0.66 -0.1
1,137,425 - ABZR86_RS05035 0.66 -1.1
1,137,425 - ABZR86_RS05035 0.66 -0.4
1,137,425 - ABZR86_RS05035 0.66 -0.6
1,137,425 - ABZR86_RS05035 0.66 -1.2
1,137,425 - ABZR86_RS05035 0.66 -0.5
1,137,453 + ABZR86_RS05035 0.74 +0.2
1,137,453 + ABZR86_RS05035 0.74 +0.0
1,137,454 - ABZR86_RS05035 0.74 +0.0
1,137,454 - ABZR86_RS05035 0.74 +0.0
1,137,567 + -1.4
1,137,568 - -0.4
1,137,579 + -0.3
1,137,580 - -0.2
1,137,580 - +0.0
1,137,580 - -0.2
1,137,594 + -0.7
1,137,676 + ABZR86_RS05040 0.22 +0.2
1,137,684 + ABZR86_RS05040 0.23 +0.3
1,137,684 + ABZR86_RS05040 0.23 +1.4
1,137,684 + ABZR86_RS05040 0.23 +0.1
1,137,684 + ABZR86_RS05040 0.23 +0.2
1,137,684 + ABZR86_RS05040 0.23 +0.5
1,137,685 - ABZR86_RS05040 0.24 -0.7
1,137,685 - ABZR86_RS05040 0.24 -0.1
1,137,685 - ABZR86_RS05040 0.24 -0.4
1,137,714 + ABZR86_RS05040 0.28 +1.0
1,137,715 - ABZR86_RS05040 0.28 +0.1
1,137,715 - ABZR86_RS05040 0.28 -0.1
1,137,715 - ABZR86_RS05040 0.28 -0.5
1,138,139 - -0.1
1,138,139 - +0.2
1,138,139 - +0.5
1,138,142 + -1.3
1,138,245 - -0.6
1,138,280 + +0.2
1,138,373 + ABZR86_RS05045 0.12 -0.2
1,138,374 - ABZR86_RS05045 0.12 +0.3
1,138,374 - ABZR86_RS05045 0.12 -0.4
1,138,374 - ABZR86_RS05045 0.12 -0.8
1,138,374 - ABZR86_RS05045 0.12 -0.1
1,138,470 - ABZR86_RS05045 0.17 +1.2
1,138,470 - ABZR86_RS05045 0.17 +0.6
1,138,506 - ABZR86_RS05045 0.19 +0.1
1,138,506 - ABZR86_RS05045 0.19 -0.4
1,138,506 - ABZR86_RS05045 0.19 +0.2
1,138,565 + ABZR86_RS05045 0.23 +0.3
1,138,565 + ABZR86_RS05045 0.23 +0.4
1,138,566 - ABZR86_RS05045 0.23 -0.0
1,138,583 + ABZR86_RS05045 0.24 -1.3
1,138,608 + ABZR86_RS05045 0.25 -0.0
1,138,656 - ABZR86_RS05045 0.28 -0.8
1,138,692 - ABZR86_RS05045 0.30 +0.2
1,138,761 - ABZR86_RS05045 0.34 +0.1
1,138,847 + ABZR86_RS05045 0.39 +0.6
1,138,850 + ABZR86_RS05045 0.39 +0.0
1,138,850 + ABZR86_RS05045 0.39 -0.7
1,138,851 - ABZR86_RS05045 0.39 +0.4
1,138,853 + ABZR86_RS05045 0.39 -0.1
1,138,857 - ABZR86_RS05045 0.39 -0.5
1,138,991 + ABZR86_RS05045 0.47 -0.3
1,139,094 - ABZR86_RS05045 0.53 +0.2

Or see this region's nucleotide sequence