Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05025

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05015 and ABZR86_RS05020 are separated by 28 nucleotidesABZR86_RS05020 and ABZR86_RS05025 are separated by 0 nucleotidesABZR86_RS05025 and ABZR86_RS05030 are separated by 160 nucleotides ABZR86_RS05015: ABZR86_RS05015 - substrate-binding domain-containing protein, at 1,121,950 to 1,123,206 _RS05015 ABZR86_RS05020: ABZR86_RS05020 - hypothetical protein, at 1,123,235 to 1,123,450 _RS05020 ABZR86_RS05025: ABZR86_RS05025 - hypothetical protein, at 1,123,451 to 1,123,798 _RS05025 ABZR86_RS05030: ABZR86_RS05030 - filamentous haemagglutinin family protein, at 1,123,959 to 1,137,062 _RS05030 Position (kb) 1123 1124Strain fitness (log2 ratio) -1 0 1at 1122.498 kb on - strand, within ABZR86_RS05015at 1122.498 kb on - strand, within ABZR86_RS05015at 1122.617 kb on + strand, within ABZR86_RS05015at 1122.618 kb on - strand, within ABZR86_RS05015at 1122.618 kb on - strand, within ABZR86_RS05015at 1122.821 kb on + strand, within ABZR86_RS05015at 1122.821 kb on + strand, within ABZR86_RS05015at 1122.821 kb on + strand, within ABZR86_RS05015at 1122.821 kb on + strand, within ABZR86_RS05015at 1122.821 kb on + strand, within ABZR86_RS05015at 1122.821 kb on + strand, within ABZR86_RS05015at 1122.822 kb on - strand, within ABZR86_RS05015at 1122.822 kb on - strand, within ABZR86_RS05015at 1122.822 kb on - strand, within ABZR86_RS05015at 1122.830 kb on + strand, within ABZR86_RS05015at 1123.011 kb on - strand, within ABZR86_RS05015at 1123.040 kb on + strand, within ABZR86_RS05015at 1123.040 kb on + strand, within ABZR86_RS05015at 1123.040 kb on + strand, within ABZR86_RS05015at 1123.041 kb on - strand, within ABZR86_RS05015at 1123.041 kb on - strand, within ABZR86_RS05015at 1123.041 kb on - strand, within ABZR86_RS05015at 1123.041 kb on - strand, within ABZR86_RS05015at 1123.241 kb on + strandat 1123.242 kb on - strandat 1123.242 kb on - strandat 1123.416 kb on + strand, within ABZR86_RS05020at 1123.416 kb on + strand, within ABZR86_RS05020at 1123.417 kb on - strand, within ABZR86_RS05020at 1123.861 kb on - strandat 1124.060 kb on - strandat 1124.060 kb on - strandat 1124.389 kb on + strandat 1124.389 kb on + strandat 1124.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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1,122,498 - ABZR86_RS05015 0.44 -1.3
1,122,498 - ABZR86_RS05015 0.44 -0.3
1,122,617 + ABZR86_RS05015 0.53 +0.7
1,122,618 - ABZR86_RS05015 0.53 +0.2
1,122,618 - ABZR86_RS05015 0.53 -0.3
1,122,821 + ABZR86_RS05015 0.69 -1.5
1,122,821 + ABZR86_RS05015 0.69 -0.3
1,122,821 + ABZR86_RS05015 0.69 +0.2
1,122,821 + ABZR86_RS05015 0.69 -1.1
1,122,821 + ABZR86_RS05015 0.69 -0.3
1,122,821 + ABZR86_RS05015 0.69 -0.4
1,122,822 - ABZR86_RS05015 0.69 +0.0
1,122,822 - ABZR86_RS05015 0.69 -0.1
1,122,822 - ABZR86_RS05015 0.69 +0.3
1,122,830 + ABZR86_RS05015 0.70 -0.2
1,123,011 - ABZR86_RS05015 0.84 +0.1
1,123,040 + ABZR86_RS05015 0.87 +1.0
1,123,040 + ABZR86_RS05015 0.87 -0.3
1,123,040 + ABZR86_RS05015 0.87 -0.6
1,123,041 - ABZR86_RS05015 0.87 +0.1
1,123,041 - ABZR86_RS05015 0.87 +0.4
1,123,041 - ABZR86_RS05015 0.87 -0.5
1,123,041 - ABZR86_RS05015 0.87 +0.2
1,123,241 + -1.1
1,123,242 - -0.6
1,123,242 - -1.1
1,123,416 + ABZR86_RS05020 0.84 +0.7
1,123,416 + ABZR86_RS05020 0.84 +0.5
1,123,417 - ABZR86_RS05020 0.84 +1.1
1,123,861 - +1.1
1,124,060 - +0.5
1,124,060 - +0.6
1,124,389 + -0.2
1,124,389 + +0.7
1,124,390 - +0.1

Or see this region's nucleotide sequence