Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS03750 and ABZR86_RS03755 are separated by 8 nucleotides ABZR86_RS03755 and ABZR86_RS03760 are separated by 79 nucleotides ABZR86_RS03760 and ABZR86_RS03765 are separated by 55 nucleotides ABZR86_RS03765 and ABZR86_RS03770 are separated by 535 nucleotides
ABZR86_RS03750: ABZR86_RS03750 - hypothetical protein, at 817,671 to 817,895
_RS03750
ABZR86_RS03755: ABZR86_RS03755 - TetR/AcrR family transcriptional regulator, at 817,904 to 818,512
_RS03755
ABZR86_RS03760: ABZR86_RS03760 - hypothetical protein, at 818,592 to 818,993
_RS03760
ABZR86_RS03765: ABZR86_RS03765 - hypothetical protein, at 819,049 to 819,411
_RS03765
ABZR86_RS03770: ABZR86_RS03770 - M4 family metallopeptidase, at 819,947 to 821,785
_RS03770
Position (kb) 818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 817.743 kb on + strand, within ABZR86_RS03750 at 817.743 kb on + strand, within ABZR86_RS03750 at 817.743 kb on + strand, within ABZR86_RS03750 at 817.744 kb on - strand, within ABZR86_RS03750 at 817.777 kb on - strand, within ABZR86_RS03750 at 817.866 kb on + strand, within ABZR86_RS03750 at 817.866 kb on + strand, within ABZR86_RS03750 at 817.875 kb on + strand at 817.876 kb on - strand at 817.995 kb on + strand, within ABZR86_RS03755 at 818.150 kb on + strand, within ABZR86_RS03755 at 818.150 kb on + strand, within ABZR86_RS03755 at 818.150 kb on + strand, within ABZR86_RS03755 at 818.151 kb on - strand, within ABZR86_RS03755 at 818.151 kb on - strand, within ABZR86_RS03755 at 818.346 kb on + strand, within ABZR86_RS03755 at 818.346 kb on + strand, within ABZR86_RS03755 at 818.346 kb on + strand, within ABZR86_RS03755 at 818.496 kb on + strand at 818.496 kb on + strand at 818.496 kb on + strand at 818.497 kb on - strand at 818.497 kb on - strand at 818.567 kb on + strand at 818.567 kb on + strand at 818.567 kb on + strand at 818.568 kb on - strand at 818.598 kb on + strand at 818.599 kb on - strand at 818.599 kb on - strand at 818.602 kb on + strand at 818.603 kb on - strand at 818.603 kb on - strand at 818.603 kb on - strand at 818.611 kb on + strand at 818.612 kb on - strand at 818.612 kb on - strand at 818.751 kb on + strand, within ABZR86_RS03760 at 818.985 kb on + strand at 818.989 kb on + strand at 818.989 kb on + strand at 818.989 kb on + strand at 818.989 kb on + strand at 818.989 kb on + strand at 818.989 kb on + strand at 818.989 kb on + strand at 818.990 kb on - strand at 818.990 kb on - strand at 818.990 kb on - strand at 818.990 kb on - strand at 818.990 kb on - strand at 818.990 kb on - strand at 819.149 kb on + strand, within ABZR86_RS03765 at 819.149 kb on + strand, within ABZR86_RS03765 at 819.149 kb on + strand, within ABZR86_RS03765 at 819.150 kb on - strand, within ABZR86_RS03765 at 819.150 kb on - strand, within ABZR86_RS03765 at 819.239 kb on + strand, within ABZR86_RS03765 at 819.239 kb on + strand, within ABZR86_RS03765 at 819.240 kb on - strand, within ABZR86_RS03765 at 819.240 kb on - strand, within ABZR86_RS03765 at 819.245 kb on + strand, within ABZR86_RS03765 at 819.245 kb on + strand, within ABZR86_RS03765 at 819.245 kb on + strand, within ABZR86_RS03765 at 819.246 kb on - strand, within ABZR86_RS03765 at 819.246 kb on - strand, within ABZR86_RS03765 at 819.548 kb on - strand at 819.684 kb on - strand at 819.725 kb on - strand at 819.769 kb on + strand at 819.770 kb on - strand at 819.770 kb on - strand at 819.770 kb on - strand at 819.806 kb on + strand at 819.806 kb on + strand at 819.807 kb on - strand at 819.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 817,743 + ABZR86_RS03750 0.32 -0.2 817,743 + ABZR86_RS03750 0.32 -0.2 817,743 + ABZR86_RS03750 0.32 +0.4 817,744 - ABZR86_RS03750 0.32 +0.6 817,777 - ABZR86_RS03750 0.47 +0.0 817,866 + ABZR86_RS03750 0.87 -0.1 817,866 + ABZR86_RS03750 0.87 +0.1 817,875 + +0.8 817,876 - -0.1 817,995 + ABZR86_RS03755 0.15 +0.6 818,150 + ABZR86_RS03755 0.40 +0.0 818,150 + ABZR86_RS03755 0.40 +0.2 818,150 + ABZR86_RS03755 0.40 +0.4 818,151 - ABZR86_RS03755 0.41 +0.6 818,151 - ABZR86_RS03755 0.41 +0.6 818,346 + ABZR86_RS03755 0.73 +0.1 818,346 + ABZR86_RS03755 0.73 -0.2 818,346 + ABZR86_RS03755 0.73 -0.1 818,496 + -0.2 818,496 + +0.1 818,496 + -3.1 818,497 - +0.1 818,497 - +0.1 818,567 + -0.2 818,567 + -0.6 818,567 + +0.0 818,568 - +0.6 818,598 + -2.6 818,599 - -0.5 818,599 - +0.4 818,602 + +1.6 818,603 - -0.3 818,603 - -0.9 818,603 - -0.2 818,611 + +1.2 818,612 - -0.5 818,612 - +0.0 818,751 + ABZR86_RS03760 0.40 -1.0 818,985 + -0.4 818,989 + -0.1 818,989 + -0.0 818,989 + +1.7 818,989 + +0.4 818,989 + -0.8 818,989 + +0.6 818,989 + +0.1 818,990 - +1.1 818,990 - -0.1 818,990 - +0.3 818,990 - -0.1 818,990 - +0.3 818,990 - +0.1 819,149 + ABZR86_RS03765 0.28 +0.7 819,149 + ABZR86_RS03765 0.28 +0.1 819,149 + ABZR86_RS03765 0.28 +2.0 819,150 - ABZR86_RS03765 0.28 +0.1 819,150 - ABZR86_RS03765 0.28 -1.5 819,239 + ABZR86_RS03765 0.52 -0.8 819,239 + ABZR86_RS03765 0.52 +0.5 819,240 - ABZR86_RS03765 0.53 -0.9 819,240 - ABZR86_RS03765 0.53 -0.7 819,245 + ABZR86_RS03765 0.54 -0.2 819,245 + ABZR86_RS03765 0.54 +0.3 819,245 + ABZR86_RS03765 0.54 +0.2 819,246 - ABZR86_RS03765 0.54 -0.4 819,246 - ABZR86_RS03765 0.54 +0.6 819,548 - +1.1 819,684 - +1.0 819,725 - +1.2 819,769 + +0.1 819,770 - +0.9 819,770 - -0.1 819,770 - +1.0 819,806 + +0.7 819,806 + +0.3 819,807 - +0.4 819,970 + +0.3
Or see this region's nucleotide sequence