Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02890

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02880 and ABZR86_RS02885 are separated by 3 nucleotidesABZR86_RS02885 and ABZR86_RS02890 overlap by 1 nucleotidesABZR86_RS02890 and ABZR86_RS02895 overlap by 4 nucleotides ABZR86_RS02880: ABZR86_RS02880 - sulfate ABC transporter substrate-binding protein, at 587,066 to 588,058 _RS02880 ABZR86_RS02885: ABZR86_RS02885 - sulfate ABC transporter permease subunit CysT, at 588,062 to 588,886 _RS02885 ABZR86_RS02890: ABZR86_RS02890 - sulfate ABC transporter permease subunit CysW, at 588,886 to 589,779 _RS02890 ABZR86_RS02895: ABZR86_RS02895 - ABC transporter ATP-binding protein, at 589,776 to 590,930 _RS02895 Position (kb) 588 589 590Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 587.894 kb on + strand, within ABZR86_RS02880at 587.895 kb on - strand, within ABZR86_RS02880at 587.897 kb on + strand, within ABZR86_RS02880at 587.897 kb on + strand, within ABZR86_RS02880at 587.911 kb on + strand, within ABZR86_RS02880at 587.912 kb on - strand, within ABZR86_RS02880at 587.930 kb on + strand, within ABZR86_RS02880at 587.930 kb on + strand, within ABZR86_RS02880at 587.931 kb on - strand, within ABZR86_RS02880at 588.008 kb on + strandat 588.008 kb on + strandat 588.009 kb on - strandat 588.009 kb on - strandat 588.029 kb on + strandat 588.029 kb on + strandat 588.029 kb on + strandat 588.029 kb on + strandat 588.030 kb on - strandat 588.404 kb on + strand, within ABZR86_RS02885at 588.404 kb on + strand, within ABZR86_RS02885at 588.405 kb on - strand, within ABZR86_RS02885at 588.461 kb on + strand, within ABZR86_RS02885at 588.461 kb on + strand, within ABZR86_RS02885at 588.463 kb on + strand, within ABZR86_RS02885at 588.463 kb on + strand, within ABZR86_RS02885at 588.463 kb on + strand, within ABZR86_RS02885at 588.463 kb on + strand, within ABZR86_RS02885at 588.464 kb on - strand, within ABZR86_RS02885at 588.464 kb on - strand, within ABZR86_RS02885at 588.464 kb on - strand, within ABZR86_RS02885at 588.464 kb on - strand, within ABZR86_RS02885at 588.464 kb on - strand, within ABZR86_RS02885at 588.698 kb on + strand, within ABZR86_RS02885at 588.698 kb on + strand, within ABZR86_RS02885at 588.698 kb on + strand, within ABZR86_RS02885at 588.698 kb on + strand, within ABZR86_RS02885at 588.698 kb on + strand, within ABZR86_RS02885at 588.698 kb on + strand, within ABZR86_RS02885at 588.699 kb on - strand, within ABZR86_RS02885at 588.699 kb on - strand, within ABZR86_RS02885at 588.699 kb on - strand, within ABZR86_RS02885at 588.699 kb on - strand, within ABZR86_RS02885at 588.699 kb on - strand, within ABZR86_RS02885at 588.904 kb on + strandat 589.268 kb on - strand, within ABZR86_RS02890at 589.268 kb on - strand, within ABZR86_RS02890at 589.268 kb on - strand, within ABZR86_RS02890at 589.314 kb on - strand, within ABZR86_RS02890at 589.593 kb on + strand, within ABZR86_RS02890at 589.593 kb on + strand, within ABZR86_RS02890at 589.593 kb on + strand, within ABZR86_RS02890at 589.594 kb on - strand, within ABZR86_RS02890at 589.594 kb on - strand, within ABZR86_RS02890at 589.621 kb on + strand, within ABZR86_RS02890at 589.754 kb on + strandat 590.022 kb on + strand, within ABZR86_RS02895at 590.022 kb on + strand, within ABZR86_RS02895at 590.022 kb on + strand, within ABZR86_RS02895at 590.022 kb on + strand, within ABZR86_RS02895at 590.022 kb on + strand, within ABZR86_RS02895at 590.022 kb on + strand, within ABZR86_RS02895at 590.448 kb on + strand, within ABZR86_RS02895at 590.448 kb on + strand, within ABZR86_RS02895at 590.449 kb on - strand, within ABZR86_RS02895at 590.449 kb on - strand, within ABZR86_RS02895

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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587,894 + ABZR86_RS02880 0.83 -3.1
587,895 - ABZR86_RS02880 0.83 -3.1
587,897 + ABZR86_RS02880 0.84 -1.1
587,897 + ABZR86_RS02880 0.84 -3.8
587,911 + ABZR86_RS02880 0.85 -3.2
587,912 - ABZR86_RS02880 0.85 -1.8
587,930 + ABZR86_RS02880 0.87 -3.5
587,930 + ABZR86_RS02880 0.87 -3.4
587,931 - ABZR86_RS02880 0.87 -3.4
588,008 + -2.2
588,008 + -2.5
588,009 - -1.9
588,009 - -3.5
588,029 + -1.6
588,029 + -1.1
588,029 + -2.7
588,029 + -2.6
588,030 - -4.1
588,404 + ABZR86_RS02885 0.41 -3.5
588,404 + ABZR86_RS02885 0.41 -2.0
588,405 - ABZR86_RS02885 0.42 -1.9
588,461 + ABZR86_RS02885 0.48 -2.5
588,461 + ABZR86_RS02885 0.48 -2.7
588,463 + ABZR86_RS02885 0.49 -0.2
588,463 + ABZR86_RS02885 0.49 -2.7
588,463 + ABZR86_RS02885 0.49 -3.9
588,463 + ABZR86_RS02885 0.49 -1.7
588,464 - ABZR86_RS02885 0.49 -2.0
588,464 - ABZR86_RS02885 0.49 -4.4
588,464 - ABZR86_RS02885 0.49 -1.9
588,464 - ABZR86_RS02885 0.49 -3.6
588,464 - ABZR86_RS02885 0.49 -4.5
588,698 + ABZR86_RS02885 0.77 -3.1
588,698 + ABZR86_RS02885 0.77 -3.4
588,698 + ABZR86_RS02885 0.77 -2.8
588,698 + ABZR86_RS02885 0.77 -1.7
588,698 + ABZR86_RS02885 0.77 -2.6
588,698 + ABZR86_RS02885 0.77 -2.0
588,699 - ABZR86_RS02885 0.77 -1.8
588,699 - ABZR86_RS02885 0.77 -2.1
588,699 - ABZR86_RS02885 0.77 -2.6
588,699 - ABZR86_RS02885 0.77 -1.6
588,699 - ABZR86_RS02885 0.77 -0.2
588,904 + -2.6
589,268 - ABZR86_RS02890 0.43 -2.5
589,268 - ABZR86_RS02890 0.43 -2.5
589,268 - ABZR86_RS02890 0.43 -3.2
589,314 - ABZR86_RS02890 0.48 -3.5
589,593 + ABZR86_RS02890 0.79 -2.2
589,593 + ABZR86_RS02890 0.79 -3.0
589,593 + ABZR86_RS02890 0.79 +0.2
589,594 - ABZR86_RS02890 0.79 -2.9
589,594 - ABZR86_RS02890 0.79 -2.0
589,621 + ABZR86_RS02890 0.82 -2.1
589,754 + -2.7
590,022 + ABZR86_RS02895 0.21 -2.1
590,022 + ABZR86_RS02895 0.21 -1.6
590,022 + ABZR86_RS02895 0.21 -2.9
590,022 + ABZR86_RS02895 0.21 -2.7
590,022 + ABZR86_RS02895 0.21 -1.8
590,022 + ABZR86_RS02895 0.21 -3.1
590,448 + ABZR86_RS02895 0.58 -2.5
590,448 + ABZR86_RS02895 0.58 -4.1
590,449 - ABZR86_RS02895 0.58 -2.2
590,449 - ABZR86_RS02895 0.58 -1.6

Or see this region's nucleotide sequence