Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02440 and ABZR86_RS02445 are separated by 108 nucleotides ABZR86_RS02445 and ABZR86_RS02450 are separated by 17 nucleotides ABZR86_RS02450 and ABZR86_RS02455 are separated by 12 nucleotides ABZR86_RS02455 and ABZR86_RS02460 are separated by 223 nucleotides ABZR86_RS02460 and ABZR86_RS02465 are separated by 282 nucleotides
ABZR86_RS02440: ABZR86_RS02440 - hypothetical protein, at 506,240 to 506,680
_RS02440
ABZR86_RS02445: ABZR86_RS02445 - hypothetical protein, at 506,789 to 507,418
_RS02445
ABZR86_RS02450: ABZR86_RS02450 - hypothetical protein, at 507,436 to 507,654
_RS02450
ABZR86_RS02455: ABZR86_RS02455 - hypothetical protein, at 507,667 to 507,876
_RS02455
ABZR86_RS02460: ABZR86_RS02460 - hypothetical protein, at 508,100 to 508,336
_RS02460
ABZR86_RS02465: ABZR86_RS02465 - hypothetical protein, at 508,619 to 508,945
_RS02465
Position (kb) 507
508 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 506.506 kb on + strand, within ABZR86_RS02440 at 506.507 kb on - strand, within ABZR86_RS02440 at 506.509 kb on + strand, within ABZR86_RS02440 at 506.510 kb on - strand, within ABZR86_RS02440 at 506.510 kb on - strand, within ABZR86_RS02440 at 506.510 kb on - strand, within ABZR86_RS02440 at 506.510 kb on - strand, within ABZR86_RS02440 at 506.510 kb on - strand, within ABZR86_RS02440 at 506.510 kb on - strand, within ABZR86_RS02440 at 506.510 kb on - strand, within ABZR86_RS02440 at 506.510 kb on - strand, within ABZR86_RS02440 at 506.686 kb on + strand at 506.686 kb on + strand at 506.687 kb on - strand at 506.726 kb on - strand at 506.732 kb on + strand at 506.732 kb on + strand at 506.745 kb on + strand at 506.745 kb on + strand at 506.745 kb on + strand at 506.745 kb on + strand at 506.746 kb on - strand at 506.746 kb on - strand at 506.773 kb on + strand at 506.794 kb on + strand at 506.795 kb on - strand at 506.795 kb on - strand at 506.800 kb on + strand at 506.801 kb on - strand at 506.900 kb on + strand, within ABZR86_RS02445 at 506.900 kb on - strand, within ABZR86_RS02445 at 506.903 kb on + strand, within ABZR86_RS02445 at 506.903 kb on + strand, within ABZR86_RS02445 at 506.904 kb on - strand, within ABZR86_RS02445 at 507.593 kb on + strand, within ABZR86_RS02450 at 507.631 kb on + strand, within ABZR86_RS02450 at 507.631 kb on + strand, within ABZR86_RS02450 at 507.631 kb on + strand, within ABZR86_RS02450 at 507.631 kb on + strand, within ABZR86_RS02450 at 507.631 kb on + strand, within ABZR86_RS02450 at 507.632 kb on - strand, within ABZR86_RS02450 at 507.678 kb on + strand at 507.678 kb on + strand at 507.719 kb on - strand, within ABZR86_RS02455 at 507.719 kb on - strand, within ABZR86_RS02455 at 507.719 kb on - strand, within ABZR86_RS02455 at 507.881 kb on + strand at 507.881 kb on + strand at 507.882 kb on - strand at 507.882 kb on - strand at 507.882 kb on - strand at 507.882 kb on - strand at 508.011 kb on - strand at 508.057 kb on + strand at 508.058 kb on - strand at 508.058 kb on - strand at 508.079 kb on + strand at 508.079 kb on + strand at 508.079 kb on + strand at 508.080 kb on - strand at 508.217 kb on + strand, within ABZR86_RS02460 at 508.453 kb on + strand at 508.453 kb on + strand at 508.453 kb on + strand at 508.453 kb on + strand at 508.454 kb on - strand at 508.454 kb on - strand at 508.454 kb on - strand at 508.481 kb on + strand at 508.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 506,506 + ABZR86_RS02440 0.60 -3.0 506,507 - ABZR86_RS02440 0.61 -0.6 506,509 + ABZR86_RS02440 0.61 +1.2 506,510 - ABZR86_RS02440 0.61 +1.1 506,510 - ABZR86_RS02440 0.61 -0.7 506,510 - ABZR86_RS02440 0.61 +0.3 506,510 - ABZR86_RS02440 0.61 -0.3 506,510 - ABZR86_RS02440 0.61 -0.1 506,510 - ABZR86_RS02440 0.61 +0.6 506,510 - ABZR86_RS02440 0.61 -0.0 506,510 - ABZR86_RS02440 0.61 -0.8 506,686 + -4.1 506,686 + -0.0 506,687 - +0.4 506,726 - -0.8 506,732 + -1.1 506,732 + +0.6 506,745 + +0.3 506,745 + +0.2 506,745 + +0.1 506,745 + +0.1 506,746 - +0.5 506,746 - -0.1 506,773 + -0.0 506,794 + -0.6 506,795 - -0.4 506,795 - +0.5 506,800 + +0.5 506,801 - +0.3 506,900 + ABZR86_RS02445 0.18 +0.2 506,900 - ABZR86_RS02445 0.18 +0.8 506,903 + ABZR86_RS02445 0.18 +0.2 506,903 + ABZR86_RS02445 0.18 +0.5 506,904 - ABZR86_RS02445 0.18 -1.0 507,593 + ABZR86_RS02450 0.72 -3.7 507,631 + ABZR86_RS02450 0.89 -3.3 507,631 + ABZR86_RS02450 0.89 -0.9 507,631 + ABZR86_RS02450 0.89 -3.5 507,631 + ABZR86_RS02450 0.89 -2.4 507,631 + ABZR86_RS02450 0.89 -5.0 507,632 - ABZR86_RS02450 0.89 -0.6 507,678 + -0.5 507,678 + -0.0 507,719 - ABZR86_RS02455 0.25 -0.0 507,719 - ABZR86_RS02455 0.25 -0.1 507,719 - ABZR86_RS02455 0.25 -0.6 507,881 + +0.7 507,881 + -1.8 507,882 - -0.6 507,882 - -0.0 507,882 - -0.6 507,882 - -0.5 508,011 - -0.5 508,057 + -4.9 508,058 - +0.0 508,058 - +0.2 508,079 + -4.5 508,079 + -1.8 508,079 + -4.1 508,080 - -0.5 508,217 + ABZR86_RS02460 0.49 +0.3 508,453 + -0.6 508,453 + +0.7 508,453 + +0.2 508,453 + -0.0 508,454 - -0.1 508,454 - +0.6 508,454 - -0.1 508,481 + +0.7 508,643 - +0.0
Or see this region's nucleotide sequence