Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01920

Experiment: D-Cellobiose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS01910 and ABZR86_RS01915 are separated by 28 nucleotidesABZR86_RS01915 and ABZR86_RS01920 are separated by 35 nucleotidesABZR86_RS01920 and ABZR86_RS01925 are separated by 126 nucleotides ABZR86_RS01910: ABZR86_RS01910 - oligoribonuclease, at 415,635 to 416,195 _RS01910 ABZR86_RS01915: ABZR86_RS01915 - dihydropteroate synthase, at 416,224 to 417,135 _RS01915 ABZR86_RS01920: ABZR86_RS01920 - phosphoglucosamine mutase, at 417,171 to 418,523 _RS01920 ABZR86_RS01925: ABZR86_RS01925 - 2-oxoglutarate and iron-dependent oxygenase domain-containing protein, at 418,650 to 419,597 _RS01925 Position (kb) 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1at 417.054 kb on - strandat 417.133 kb on + strandat 417.133 kb on + strandat 417.133 kb on + strandat 418.630 kb on + strandat 418.630 kb on + strandat 418.630 kb on + strandat 418.630 kb on + strandat 418.630 kb on + strandat 418.630 kb on + strandat 418.631 kb on - strandat 418.631 kb on - strandat 418.631 kb on - strandat 418.631 kb on - strandat 418.655 kb on + strandat 418.655 kb on + strandat 418.655 kb on + strandat 418.655 kb on + strandat 418.656 kb on - strandat 418.656 kb on - strandat 418.656 kb on - strandat 418.695 kb on + strandat 418.695 kb on + strandat 418.721 kb on - strandat 418.750 kb on - strand, within ABZR86_RS01925at 418.750 kb on - strand, within ABZR86_RS01925at 418.806 kb on + strand, within ABZR86_RS01925at 418.806 kb on + strand, within ABZR86_RS01925at 418.807 kb on - strand, within ABZR86_RS01925at 418.857 kb on + strand, within ABZR86_RS01925at 418.857 kb on + strand, within ABZR86_RS01925at 418.858 kb on - strand, within ABZR86_RS01925at 418.858 kb on - strand, within ABZR86_RS01925at 418.890 kb on + strand, within ABZR86_RS01925at 418.890 kb on + strand, within ABZR86_RS01925at 418.890 kb on + strand, within ABZR86_RS01925at 418.929 kb on + strand, within ABZR86_RS01925at 418.930 kb on - strand, within ABZR86_RS01925at 418.930 kb on - strand, within ABZR86_RS01925at 418.930 kb on - strand, within ABZR86_RS01925at 419.111 kb on + strand, within ABZR86_RS01925at 419.130 kb on + strand, within ABZR86_RS01925at 419.130 kb on + strand, within ABZR86_RS01925at 419.131 kb on - strand, within ABZR86_RS01925at 419.131 kb on - strand, within ABZR86_RS01925at 419.131 kb on - strand, within ABZR86_RS01925at 419.131 kb on - strand, within ABZR86_RS01925at 419.386 kb on - strand, within ABZR86_RS01925at 419.445 kb on + strand, within ABZR86_RS01925at 419.457 kb on + strand, within ABZR86_RS01925at 419.457 kb on + strand, within ABZR86_RS01925at 419.458 kb on - strand, within ABZR86_RS01925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
remove
417,054 - -0.5
417,133 + -0.8
417,133 + -0.5
417,133 + -1.4
418,630 + -0.4
418,630 + +0.1
418,630 + +0.2
418,630 + -0.5
418,630 + +0.1
418,630 + +0.2
418,631 - -1.5
418,631 - -0.4
418,631 - +0.1
418,631 - +1.5
418,655 + +1.3
418,655 + +0.4
418,655 + -0.3
418,655 + +0.5
418,656 - -2.8
418,656 - -0.3
418,656 - +0.1
418,695 + -0.1
418,695 + -0.5
418,721 - +0.0
418,750 - ABZR86_RS01925 0.11 -0.4
418,750 - ABZR86_RS01925 0.11 -0.9
418,806 + ABZR86_RS01925 0.16 +0.1
418,806 + ABZR86_RS01925 0.16 -0.6
418,807 - ABZR86_RS01925 0.17 +1.3
418,857 + ABZR86_RS01925 0.22 +0.6
418,857 + ABZR86_RS01925 0.22 +0.0
418,858 - ABZR86_RS01925 0.22 +0.7
418,858 - ABZR86_RS01925 0.22 +0.0
418,890 + ABZR86_RS01925 0.25 -0.4
418,890 + ABZR86_RS01925 0.25 +0.3
418,890 + ABZR86_RS01925 0.25 -0.2
418,929 + ABZR86_RS01925 0.29 +0.5
418,930 - ABZR86_RS01925 0.30 +0.7
418,930 - ABZR86_RS01925 0.30 +0.7
418,930 - ABZR86_RS01925 0.30 +0.7
419,111 + ABZR86_RS01925 0.49 +1.2
419,130 + ABZR86_RS01925 0.51 +0.9
419,130 + ABZR86_RS01925 0.51 -0.6
419,131 - ABZR86_RS01925 0.51 +0.9
419,131 - ABZR86_RS01925 0.51 -1.1
419,131 - ABZR86_RS01925 0.51 -0.7
419,131 - ABZR86_RS01925 0.51 -0.7
419,386 - ABZR86_RS01925 0.78 -0.6
419,445 + ABZR86_RS01925 0.84 -0.4
419,457 + ABZR86_RS01925 0.85 +0.0
419,457 + ABZR86_RS01925 0.85 +0.5
419,458 - ABZR86_RS01925 0.85 -0.3

Or see this region's nucleotide sequence