Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1343 and DvMF_1344 are separated by 465 nucleotides DvMF_1344 and DvMF_1345 are separated by 396 nucleotides DvMF_1345 and DvMF_1346 are separated by 172 nucleotides
DvMF_1343: DvMF_1343 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,637,952 to 1,638,965
_1343
DvMF_1344: DvMF_1344 - extracellular solute-binding protein family 3 (RefSeq), at 1,639,431 to 1,640,249
_1344
DvMF_1345: DvMF_1345 - hypothetical protein (RefSeq), at 1,640,646 to 1,640,834
_1345
DvMF_1346: DvMF_1346 - Glu/Leu/Phe/Val dehydrogenase (RefSeq), at 1,641,007 to 1,644,060
_1346
Position (kb)
1639
1640
1641 Strain fitness (log2 ratio)
-1
0
1 at 1638.469 kb on + strand, within DvMF_1343 at 1638.479 kb on + strand, within DvMF_1343 at 1638.550 kb on + strand, within DvMF_1343 at 1638.942 kb on + strand at 1638.945 kb on - strand at 1638.949 kb on + strand at 1638.949 kb on + strand at 1638.949 kb on + strand at 1639.550 kb on - strand, within DvMF_1344 at 1639.584 kb on + strand, within DvMF_1344 at 1639.609 kb on + strand, within DvMF_1344 at 1639.879 kb on + strand, within DvMF_1344 at 1640.644 kb on + strand at 1640.827 kb on - strand at 1640.872 kb on - strand at 1640.961 kb on - strand at 1640.963 kb on + strand at 1641.105 kb on - strand at 1641.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,638,469 + DvMF_1343 0.51 -0.2 1,638,479 + DvMF_1343 0.52 +0.4 1,638,550 + DvMF_1343 0.59 +0.8 1,638,942 + +0.0 1,638,945 - -0.3 1,638,949 + -1.4 1,638,949 + -0.3 1,638,949 + +0.3 1,639,550 - DvMF_1344 0.15 +0.5 1,639,584 + DvMF_1344 0.19 -0.2 1,639,609 + DvMF_1344 0.22 +0.2 1,639,879 + DvMF_1344 0.55 -0.4 1,640,644 + +0.1 1,640,827 - -0.4 1,640,872 - -0.6 1,640,961 - -0.3 1,640,963 + -0.3 1,641,105 - -0.2 1,641,197 - +0.1
Or see this region's nucleotide sequence