Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1341 and DvMF_1342 are separated by 437 nucleotides DvMF_1342 and DvMF_1343 overlap by 4 nucleotides
DvMF_1341: DvMF_1341 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,636,049 to 1,636,786
_1341
DvMF_1342: DvMF_1342 - ABC transporter related (RefSeq), at 1,637,224 to 1,637,955
_1342
DvMF_1343: DvMF_1343 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 1,637,952 to 1,638,965
_1343
Position (kb)
1637
1638 Strain fitness (log2 ratio)
-1
0
1 at 1636.726 kb on + strand at 1636.745 kb on - strand at 1636.879 kb on - strand at 1637.114 kb on + strand at 1637.273 kb on + strand at 1637.281 kb on - strand at 1637.343 kb on - strand, within DvMF_1342 at 1637.350 kb on + strand, within DvMF_1342 at 1637.477 kb on + strand, within DvMF_1342 at 1637.793 kb on + strand, within DvMF_1342 at 1637.883 kb on + strand at 1637.883 kb on + strand at 1637.984 kb on - strand at 1638.013 kb on + strand at 1638.015 kb on + strand at 1638.015 kb on + strand at 1638.015 kb on + strand at 1638.023 kb on - strand at 1638.023 kb on - strand at 1638.023 kb on - strand at 1638.023 kb on - strand at 1638.028 kb on - strand at 1638.042 kb on - strand at 1638.082 kb on + strand, within DvMF_1343 at 1638.181 kb on - strand, within DvMF_1343 at 1638.241 kb on + strand, within DvMF_1343 at 1638.387 kb on - strand, within DvMF_1343 at 1638.387 kb on - strand, within DvMF_1343 at 1638.421 kb on - strand, within DvMF_1343 at 1638.469 kb on + strand, within DvMF_1343 at 1638.479 kb on + strand, within DvMF_1343 at 1638.550 kb on + strand, within DvMF_1343 at 1638.942 kb on + strand at 1638.945 kb on - strand at 1638.949 kb on + strand at 1638.949 kb on + strand at 1638.949 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 1,636,726 + +0.2 1,636,745 - -0.1 1,636,879 - -0.7 1,637,114 + -0.1 1,637,273 + -0.0 1,637,281 - -0.5 1,637,343 - DvMF_1342 0.16 +1.3 1,637,350 + DvMF_1342 0.17 +0.1 1,637,477 + DvMF_1342 0.35 -0.3 1,637,793 + DvMF_1342 0.78 +0.0 1,637,883 + -0.5 1,637,883 + +0.1 1,637,984 - -0.2 1,638,013 + +0.1 1,638,015 + +0.0 1,638,015 + -0.1 1,638,015 + +0.6 1,638,023 - -0.4 1,638,023 - -0.7 1,638,023 - +0.4 1,638,023 - -0.1 1,638,028 - -0.4 1,638,042 - +0.1 1,638,082 + DvMF_1343 0.13 +0.1 1,638,181 - DvMF_1343 0.23 -0.1 1,638,241 + DvMF_1343 0.29 -0.2 1,638,387 - DvMF_1343 0.43 +0.1 1,638,387 - DvMF_1343 0.43 -0.3 1,638,421 - DvMF_1343 0.46 +0.3 1,638,469 + DvMF_1343 0.51 -0.2 1,638,479 + DvMF_1343 0.52 +0.4 1,638,550 + DvMF_1343 0.59 +0.8 1,638,942 + +0.0 1,638,945 - -0.3 1,638,949 + -1.4 1,638,949 + -0.3 1,638,949 + +0.3
Or see this region's nucleotide sequence