Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3827 and Shewana3_3828 are separated by 129 nucleotides Shewana3_3828 and Shewana3_3829 are separated by 278 nucleotides
Shewana3_3827: Shewana3_3827 - aconitate hydratase (RefSeq), at 4,594,667 to 4,597,258
_3827
Shewana3_3828: Shewana3_3828 - methylitaconate delta2-delta3-isomerase (RefSeq), at 4,597,388 to 4,598,581
_3828
Shewana3_3829: Shewana3_3829 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 4,598,860 to 4,603,377
_3829
Position (kb)
4597
4598
4599 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 4596.390 kb on - strand, within Shewana3_3827 at 4596.395 kb on - strand, within Shewana3_3827 at 4596.395 kb on - strand, within Shewana3_3827 at 4596.415 kb on - strand, within Shewana3_3827 at 4596.438 kb on + strand, within Shewana3_3827 at 4596.537 kb on + strand, within Shewana3_3827 at 4596.574 kb on + strand, within Shewana3_3827 at 4596.607 kb on - strand, within Shewana3_3827 at 4596.619 kb on + strand, within Shewana3_3827 at 4596.901 kb on - strand, within Shewana3_3827 at 4596.997 kb on + strand, within Shewana3_3827 at 4597.005 kb on - strand at 4597.106 kb on + strand at 4597.162 kb on - strand at 4597.188 kb on + strand at 4597.209 kb on - strand at 4597.313 kb on + strand at 4597.422 kb on - strand at 4597.552 kb on + strand, within Shewana3_3828 at 4597.560 kb on - strand, within Shewana3_3828 at 4597.567 kb on + strand, within Shewana3_3828 at 4597.764 kb on - strand, within Shewana3_3828 at 4597.966 kb on - strand, within Shewana3_3828 at 4597.969 kb on + strand, within Shewana3_3828 at 4598.006 kb on + strand, within Shewana3_3828 at 4598.072 kb on + strand, within Shewana3_3828 at 4598.191 kb on + strand, within Shewana3_3828 at 4598.463 kb on + strand at 4598.463 kb on + strand at 4598.664 kb on - strand at 4598.744 kb on - strand at 4598.896 kb on + strand at 4598.978 kb on - strand at 4599.051 kb on - strand at 4599.254 kb on + strand at 4599.269 kb on + strand at 4599.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,596,390 - Shewana3_3827 0.66 -3.9 4,596,395 - Shewana3_3827 0.67 -4.7 4,596,395 - Shewana3_3827 0.67 -2.9 4,596,415 - Shewana3_3827 0.67 -5.3 4,596,438 + Shewana3_3827 0.68 -5.8 4,596,537 + Shewana3_3827 0.72 -5.1 4,596,574 + Shewana3_3827 0.74 -6.0 4,596,607 - Shewana3_3827 0.75 -4.3 4,596,619 + Shewana3_3827 0.75 -4.5 4,596,901 - Shewana3_3827 0.86 -1.1 4,596,997 + Shewana3_3827 0.90 -4.8 4,597,005 - -2.9 4,597,106 + -5.5 4,597,162 - -3.8 4,597,188 + -3.4 4,597,209 - -4.0 4,597,313 + +2.2 4,597,422 - -3.4 4,597,552 + Shewana3_3828 0.14 -4.6 4,597,560 - Shewana3_3828 0.14 -5.3 4,597,567 + Shewana3_3828 0.15 -4.8 4,597,764 - Shewana3_3828 0.31 -3.0 4,597,966 - Shewana3_3828 0.48 -1.7 4,597,969 + Shewana3_3828 0.49 -3.7 4,598,006 + Shewana3_3828 0.52 -6.5 4,598,072 + Shewana3_3828 0.57 -4.7 4,598,191 + Shewana3_3828 0.67 -3.1 4,598,463 + -4.6 4,598,463 + -4.6 4,598,664 - -2.4 4,598,744 - -1.8 4,598,896 + +0.8 4,598,978 - +0.2 4,599,051 - -0.5 4,599,254 + +0.3 4,599,269 + -1.9 4,599,277 - -2.4
Or see this region's nucleotide sequence