Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3715 and Shewana3_3716 are separated by 127 nucleotides Shewana3_3716 and Shewana3_3717 are separated by 143 nucleotides
Shewana3_3715: Shewana3_3715 - TonB-dependent receptor (RefSeq), at 4,457,096 to 4,459,534
_3715
Shewana3_3716: Shewana3_3716 - hypothetical protein (RefSeq), at 4,459,662 to 4,460,123
_3716
Shewana3_3717: Shewana3_3717 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 4,460,267 to 4,461,187
_3717
Position (kb)
4459
4460
4461 Strain fitness (log2 ratio)
-2
-1
0
1 at 4458.776 kb on - strand, within Shewana3_3715 at 4458.810 kb on + strand, within Shewana3_3715 at 4458.864 kb on + strand, within Shewana3_3715 at 4458.877 kb on - strand, within Shewana3_3715 at 4458.884 kb on - strand, within Shewana3_3715 at 4458.975 kb on - strand, within Shewana3_3715 at 4458.976 kb on - strand, within Shewana3_3715 at 4459.101 kb on - strand, within Shewana3_3715 at 4459.158 kb on + strand, within Shewana3_3715 at 4459.224 kb on + strand, within Shewana3_3715 at 4459.224 kb on + strand, within Shewana3_3715 at 4459.226 kb on - strand, within Shewana3_3715 at 4459.318 kb on + strand at 4459.373 kb on + strand at 4459.373 kb on + strand at 4459.381 kb on - strand at 4459.381 kb on - strand at 4459.452 kb on - strand at 4459.725 kb on + strand, within Shewana3_3716 at 4459.969 kb on - strand, within Shewana3_3716
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,458,776 - Shewana3_3715 0.69 -1.4 4,458,810 + Shewana3_3715 0.70 +0.4 4,458,864 + Shewana3_3715 0.72 -0.3 4,458,877 - Shewana3_3715 0.73 -0.9 4,458,884 - Shewana3_3715 0.73 +0.2 4,458,975 - Shewana3_3715 0.77 +0.4 4,458,976 - Shewana3_3715 0.77 +1.1 4,459,101 - Shewana3_3715 0.82 -0.5 4,459,158 + Shewana3_3715 0.85 +0.1 4,459,224 + Shewana3_3715 0.87 +0.1 4,459,224 + Shewana3_3715 0.87 -0.1 4,459,226 - Shewana3_3715 0.87 +0.9 4,459,318 + +0.6 4,459,373 + +0.6 4,459,373 + +0.7 4,459,381 - -0.3 4,459,381 - -2.3 4,459,452 - +1.3 4,459,725 + Shewana3_3716 0.14 +0.5 4,459,969 - Shewana3_3716 0.66 +0.6
Or see this region's nucleotide sequence