Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3663 and Shewana3_3664 are separated by 14 nucleotides Shewana3_3664 and Shewana3_3665 overlap by 14 nucleotides Shewana3_3665 and Shewana3_3666 overlap by 4 nucleotides Shewana3_3666 and Shewana3_3667 overlap by 4 nucleotides
Shewana3_3663: Shewana3_3663 - pilus (MSHA type) biogenesis protein MshL (RefSeq), at 4,400,117 to 4,401,802
_3663
Shewana3_3664: Shewana3_3664 - MSHA biogenesis protein MshK (RefSeq), at 4,401,817 to 4,402,134
_3664
Shewana3_3665: Shewana3_3665 - MSHA biogenesis protein MshJ (RefSeq), at 4,402,121 to 4,402,771
_3665
Shewana3_3666: Shewana3_3666 - fimbrial assembly family protein (RefSeq), at 4,402,768 to 4,403,370
_3666
Shewana3_3667: Shewana3_3667 - biogenesis protein MshI (RefSeq), at 4,403,367 to 4,404,245
_3667
Position (kb)
4402
4403 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4401.393 kb on - strand, within Shewana3_3663 at 4401.432 kb on + strand, within Shewana3_3663 at 4401.440 kb on - strand, within Shewana3_3663 at 4401.458 kb on - strand, within Shewana3_3663 at 4401.488 kb on + strand, within Shewana3_3663 at 4401.517 kb on + strand, within Shewana3_3663 at 4401.573 kb on - strand, within Shewana3_3663 at 4401.637 kb on + strand at 4401.754 kb on + strand at 4401.861 kb on + strand, within Shewana3_3664 at 4401.896 kb on + strand, within Shewana3_3664 at 4401.904 kb on - strand, within Shewana3_3664 at 4401.906 kb on + strand, within Shewana3_3664 at 4401.914 kb on - strand, within Shewana3_3664 at 4401.926 kb on + strand, within Shewana3_3664 at 4402.051 kb on + strand, within Shewana3_3664 at 4402.112 kb on + strand at 4402.247 kb on - strand, within Shewana3_3665 at 4402.740 kb on - strand at 4402.825 kb on - strand at 4403.052 kb on + strand, within Shewana3_3666 at 4403.052 kb on + strand, within Shewana3_3666 at 4403.283 kb on + strand, within Shewana3_3666 at 4403.291 kb on - strand, within Shewana3_3666 at 4403.475 kb on - strand, within Shewana3_3667 at 4403.489 kb on + strand, within Shewana3_3667 at 4403.497 kb on - strand, within Shewana3_3667 at 4403.625 kb on - strand, within Shewana3_3667 at 4403.631 kb on - strand, within Shewana3_3667 at 4403.638 kb on + strand, within Shewana3_3667 at 4403.660 kb on + strand, within Shewana3_3667 at 4403.662 kb on + strand, within Shewana3_3667 at 4403.677 kb on + strand, within Shewana3_3667 at 4403.700 kb on + strand, within Shewana3_3667 at 4403.726 kb on - strand, within Shewana3_3667
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,401,393 - Shewana3_3663 0.76 +0.2 4,401,432 + Shewana3_3663 0.78 -2.8 4,401,440 - Shewana3_3663 0.78 +0.3 4,401,458 - Shewana3_3663 0.80 +0.3 4,401,488 + Shewana3_3663 0.81 -0.1 4,401,517 + Shewana3_3663 0.83 -0.5 4,401,573 - Shewana3_3663 0.86 -2.2 4,401,637 + -0.4 4,401,754 + -1.0 4,401,861 + Shewana3_3664 0.14 +0.2 4,401,896 + Shewana3_3664 0.25 +0.3 4,401,904 - Shewana3_3664 0.27 +0.3 4,401,906 + Shewana3_3664 0.28 -2.4 4,401,914 - Shewana3_3664 0.31 +0.2 4,401,926 + Shewana3_3664 0.34 -0.3 4,402,051 + Shewana3_3664 0.74 -1.3 4,402,112 + -0.2 4,402,247 - Shewana3_3665 0.19 -1.9 4,402,740 - +0.1 4,402,825 - -0.7 4,403,052 + Shewana3_3666 0.47 -2.2 4,403,052 + Shewana3_3666 0.47 -0.3 4,403,283 + Shewana3_3666 0.85 +1.0 4,403,291 - Shewana3_3666 0.87 +1.1 4,403,475 - Shewana3_3667 0.12 -0.1 4,403,489 + Shewana3_3667 0.14 -0.6 4,403,497 - Shewana3_3667 0.15 +0.8 4,403,625 - Shewana3_3667 0.29 +0.6 4,403,631 - Shewana3_3667 0.30 -0.2 4,403,638 + Shewana3_3667 0.31 -0.2 4,403,660 + Shewana3_3667 0.33 -1.2 4,403,662 + Shewana3_3667 0.34 +0.4 4,403,677 + Shewana3_3667 0.35 -1.2 4,403,700 + Shewana3_3667 0.38 -1.2 4,403,726 - Shewana3_3667 0.41 -1.9
Or see this region's nucleotide sequence