Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3428 and Shewana3_3429 are separated by 241 nucleotides Shewana3_3429 and Shewana3_3430 overlap by 4 nucleotides
Shewana3_3428: Shewana3_3428 - hypothetical protein (RefSeq), at 4,103,707 to 4,105,332
_3428
Shewana3_3429: Shewana3_3429 - NapD family protein (RefSeq), at 4,105,574 to 4,105,843
_3429
Shewana3_3430: Shewana3_3430 - nitrate reductase catalytic subunit (RefSeq), at 4,105,840 to 4,108,320
_3430
Position (kb)
4105
4106 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4104.621 kb on + strand, within Shewana3_3428 at 4104.987 kb on + strand, within Shewana3_3428 at 4105.046 kb on - strand, within Shewana3_3428 at 4105.153 kb on + strand, within Shewana3_3428 at 4105.153 kb on + strand, within Shewana3_3428 at 4105.345 kb on + strand at 4105.345 kb on + strand at 4105.490 kb on + strand at 4105.490 kb on + strand at 4105.498 kb on - strand at 4105.636 kb on + strand, within Shewana3_3429 at 4105.746 kb on + strand, within Shewana3_3429 at 4105.805 kb on + strand, within Shewana3_3429 at 4105.957 kb on - strand at 4106.078 kb on + strand at 4106.086 kb on - strand at 4106.243 kb on + strand, within Shewana3_3430 at 4106.250 kb on + strand, within Shewana3_3430 at 4106.422 kb on + strand, within Shewana3_3430 at 4106.634 kb on - strand, within Shewana3_3430 at 4106.760 kb on - strand, within Shewana3_3430 at 4106.796 kb on + strand, within Shewana3_3430
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,104,621 + Shewana3_3428 0.56 -0.3 4,104,987 + Shewana3_3428 0.79 -1.7 4,105,046 - Shewana3_3428 0.82 -2.3 4,105,153 + Shewana3_3428 0.89 +0.9 4,105,153 + Shewana3_3428 0.89 +0.2 4,105,345 + -1.7 4,105,345 + +0.7 4,105,490 + +0.2 4,105,490 + -3.7 4,105,498 - +0.7 4,105,636 + Shewana3_3429 0.23 -0.2 4,105,746 + Shewana3_3429 0.64 -2.1 4,105,805 + Shewana3_3429 0.86 -0.3 4,105,957 - +0.1 4,106,078 + -0.7 4,106,086 - -2.5 4,106,243 + Shewana3_3430 0.16 +0.7 4,106,250 + Shewana3_3430 0.17 +1.0 4,106,422 + Shewana3_3430 0.23 +0.1 4,106,634 - Shewana3_3430 0.32 +0.1 4,106,760 - Shewana3_3430 0.37 -2.1 4,106,796 + Shewana3_3430 0.39 +0.5
Or see this region's nucleotide sequence