Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3362 and Shewana3_3363 are separated by 161 nucleotides Shewana3_3363 and Shewana3_3364 are separated by 220 nucleotides Shewana3_3364 and Shewana3_3365 are separated by 59 nucleotides
Shewana3_3362: Shewana3_3362 - sodium:dicarboxylate symporter (RefSeq), at 4,031,827 to 4,033,149
_3362
Shewana3_3363: Shewana3_3363 - hypothetical protein (RefSeq), at 4,033,311 to 4,033,607
_3363
Shewana3_3364: Shewana3_3364 - GCN5-related N-acetyltransferase (RefSeq), at 4,033,828 to 4,034,271
_3364
Shewana3_3365: Shewana3_3365 - serine transporter, putative (RefSeq), at 4,034,331 to 4,035,623
_3365
Position (kb)
4033
4034 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4032.505 kb on - strand, within Shewana3_3362 at 4032.515 kb on + strand, within Shewana3_3362 at 4032.554 kb on - strand, within Shewana3_3362 at 4032.617 kb on + strand, within Shewana3_3362 at 4032.731 kb on - strand, within Shewana3_3362 at 4032.782 kb on - strand, within Shewana3_3362 at 4032.921 kb on + strand, within Shewana3_3362 at 4033.014 kb on + strand, within Shewana3_3362 at 4033.059 kb on + strand at 4033.099 kb on + strand at 4033.128 kb on + strand at 4033.180 kb on + strand at 4033.187 kb on + strand at 4033.187 kb on + strand at 4033.187 kb on + strand at 4033.187 kb on + strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.195 kb on - strand at 4033.205 kb on + strand at 4033.444 kb on - strand, within Shewana3_3363 at 4033.516 kb on - strand, within Shewana3_3363 at 4033.628 kb on - strand at 4033.775 kb on - strand at 4033.792 kb on - strand at 4033.908 kb on - strand, within Shewana3_3364 at 4033.932 kb on + strand, within Shewana3_3364 at 4034.121 kb on + strand, within Shewana3_3364 at 4034.129 kb on - strand, within Shewana3_3364 at 4034.244 kb on - strand at 4034.439 kb on - strand at 4034.439 kb on - strand at 4034.451 kb on - strand at 4034.561 kb on - strand, within Shewana3_3365 at 4034.564 kb on + strand, within Shewana3_3365
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,032,505 - Shewana3_3362 0.51 +0.3 4,032,515 + Shewana3_3362 0.52 -1.9 4,032,554 - Shewana3_3362 0.55 -2.8 4,032,617 + Shewana3_3362 0.60 -0.1 4,032,731 - Shewana3_3362 0.68 -2.7 4,032,782 - Shewana3_3362 0.72 -0.2 4,032,921 + Shewana3_3362 0.83 +0.4 4,033,014 + Shewana3_3362 0.90 -2.8 4,033,059 + +0.1 4,033,099 + +4.3 4,033,128 + -0.8 4,033,180 + +0.6 4,033,187 + +0.2 4,033,187 + -0.3 4,033,187 + +0.8 4,033,187 + +0.5 4,033,195 - -1.0 4,033,195 - -2.5 4,033,195 - -0.0 4,033,195 - -0.1 4,033,195 - +0.5 4,033,195 - -0.4 4,033,205 + +0.5 4,033,444 - Shewana3_3363 0.45 +0.5 4,033,516 - Shewana3_3363 0.69 +0.9 4,033,628 - -0.0 4,033,775 - -1.9 4,033,792 - +0.5 4,033,908 - Shewana3_3364 0.18 -1.8 4,033,932 + Shewana3_3364 0.23 +0.0 4,034,121 + Shewana3_3364 0.66 +0.0 4,034,129 - Shewana3_3364 0.68 -0.1 4,034,244 - +0.3 4,034,439 - +0.0 4,034,439 - +0.1 4,034,451 - +0.5 4,034,561 - Shewana3_3365 0.18 -0.1 4,034,564 + Shewana3_3365 0.18 +0.9
Or see this region's nucleotide sequence