Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgk and Shewana3_3352 are separated by 132 nucleotides Shewana3_3352 and Shewana3_3353 are separated by 128 nucleotides
Shewana3_3351: pgk - phosphoglycerate kinase (RefSeq), at 4,020,170 to 4,021,345
pgk
Shewana3_3352: Shewana3_3352 - erythrose 4-phosphate dehydrogenase (RefSeq), at 4,021,478 to 4,022,494
_3352
Shewana3_3353: Shewana3_3353 - transketolase (RefSeq), at 4,022,623 to 4,024,617
_3353
Position (kb)
4021
4022
4023 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 4021.489 kb on - strand at 4021.614 kb on - strand, within Shewana3_3352 at 4021.654 kb on + strand, within Shewana3_3352 at 4021.665 kb on - strand, within Shewana3_3352 at 4021.667 kb on + strand, within Shewana3_3352 at 4021.675 kb on - strand, within Shewana3_3352 at 4021.812 kb on - strand, within Shewana3_3352 at 4021.855 kb on + strand, within Shewana3_3352 at 4021.888 kb on + strand, within Shewana3_3352 at 4022.096 kb on - strand, within Shewana3_3352 at 4022.126 kb on - strand, within Shewana3_3352 at 4022.133 kb on + strand, within Shewana3_3352 at 4022.140 kb on - strand, within Shewana3_3352 at 4022.159 kb on + strand, within Shewana3_3352 at 4022.167 kb on - strand, within Shewana3_3352 at 4022.341 kb on - strand, within Shewana3_3352 at 4022.351 kb on - strand, within Shewana3_3352 at 4022.367 kb on - strand, within Shewana3_3352 at 4022.465 kb on + strand at 4022.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 4,021,489 - -5.1 4,021,614 - Shewana3_3352 0.13 -3.5 4,021,654 + Shewana3_3352 0.17 -0.4 4,021,665 - Shewana3_3352 0.18 -3.2 4,021,667 + Shewana3_3352 0.19 -2.2 4,021,675 - Shewana3_3352 0.19 -4.1 4,021,812 - Shewana3_3352 0.33 -2.2 4,021,855 + Shewana3_3352 0.37 -6.0 4,021,888 + Shewana3_3352 0.40 -3.2 4,022,096 - Shewana3_3352 0.61 -3.4 4,022,126 - Shewana3_3352 0.64 -4.4 4,022,133 + Shewana3_3352 0.64 -2.4 4,022,140 - Shewana3_3352 0.65 -4.2 4,022,159 + Shewana3_3352 0.67 -3.4 4,022,167 - Shewana3_3352 0.68 -4.0 4,022,341 - Shewana3_3352 0.85 -4.1 4,022,351 - Shewana3_3352 0.86 -4.0 4,022,367 - Shewana3_3352 0.87 -2.3 4,022,465 + -4.2 4,022,568 - -0.3
Or see this region's nucleotide sequence