Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3333

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3332 and Shewana3_3333 are separated by 535 nucleotidesShewana3_3333 and Shewana3_3334 are separated by 56 nucleotides Shewana3_3332: Shewana3_3332 - branched-chain amino acid transport system II carrier protein (RefSeq), at 3,993,560 to 3,994,963 _3332 Shewana3_3333: Shewana3_3333 - methyltransferase small (RefSeq), at 3,995,499 to 3,996,224 _3333 Shewana3_3334: Shewana3_3334 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 3,996,281 to 3,997,276 _3334 Position (kb) 3995 3996 3997Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3994.511 kb on - strand, within Shewana3_3332at 3994.553 kb on + strand, within Shewana3_3332at 3994.631 kb on + strand, within Shewana3_3332at 3994.720 kb on - strand, within Shewana3_3332at 3994.746 kb on + strand, within Shewana3_3332at 3994.760 kb on - strand, within Shewana3_3332at 3994.765 kb on - strand, within Shewana3_3332at 3994.806 kb on + strand, within Shewana3_3332at 3994.844 kb on - strandat 3994.941 kb on + strandat 3995.560 kb on - strandat 3995.602 kb on - strand, within Shewana3_3333at 3995.660 kb on + strand, within Shewana3_3333at 3995.843 kb on + strand, within Shewana3_3333at 3995.850 kb on - strand, within Shewana3_3333at 3995.935 kb on + strand, within Shewana3_3333at 3995.980 kb on + strand, within Shewana3_3333at 3996.070 kb on - strand, within Shewana3_3333at 3996.144 kb on + strand, within Shewana3_3333at 3996.218 kb on + strandat 3996.226 kb on - strandat 3996.237 kb on - strandat 3996.383 kb on + strand, within Shewana3_3334at 3996.575 kb on - strand, within Shewana3_3334at 3996.678 kb on - strand, within Shewana3_3334at 3996.799 kb on + strand, within Shewana3_3334at 3996.807 kb on - strand, within Shewana3_3334at 3996.807 kb on - strand, within Shewana3_3334at 3996.807 kb on - strand, within Shewana3_3334at 3996.957 kb on - strand, within Shewana3_3334at 3997.012 kb on - strand, within Shewana3_3334at 3997.142 kb on + strand, within Shewana3_3334

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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3,994,511 - Shewana3_3332 0.68 -2.2
3,994,553 + Shewana3_3332 0.71 -5.0
3,994,631 + Shewana3_3332 0.76 -1.4
3,994,720 - Shewana3_3332 0.83 -2.5
3,994,746 + Shewana3_3332 0.84 -1.5
3,994,760 - Shewana3_3332 0.85 -1.1
3,994,765 - Shewana3_3332 0.86 -1.8
3,994,806 + Shewana3_3332 0.89 -2.8
3,994,844 - -0.6
3,994,941 + -0.2
3,995,560 - +0.5
3,995,602 - Shewana3_3333 0.14 -0.9
3,995,660 + Shewana3_3333 0.22 +0.0
3,995,843 + Shewana3_3333 0.47 +0.9
3,995,850 - Shewana3_3333 0.48 +0.7
3,995,935 + Shewana3_3333 0.60 -1.6
3,995,980 + Shewana3_3333 0.66 -0.2
3,996,070 - Shewana3_3333 0.79 +0.9
3,996,144 + Shewana3_3333 0.89 +1.0
3,996,218 + -2.1
3,996,226 - -2.4
3,996,237 - -2.4
3,996,383 + Shewana3_3334 0.10 +0.3
3,996,575 - Shewana3_3334 0.30 +0.1
3,996,678 - Shewana3_3334 0.40 +0.2
3,996,799 + Shewana3_3334 0.52 -2.0
3,996,807 - Shewana3_3334 0.53 +0.1
3,996,807 - Shewana3_3334 0.53 -1.8
3,996,807 - Shewana3_3334 0.53 +0.5
3,996,957 - Shewana3_3334 0.68 +0.6
3,997,012 - Shewana3_3334 0.73 -1.6
3,997,142 + Shewana3_3334 0.86 +0.6

Or see this region's nucleotide sequence