Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3332 and Shewana3_3333 are separated by 535 nucleotides Shewana3_3333 and Shewana3_3334 are separated by 56 nucleotides
Shewana3_3332: Shewana3_3332 - branched-chain amino acid transport system II carrier protein (RefSeq), at 3,993,560 to 3,994,963
_3332
Shewana3_3333: Shewana3_3333 - methyltransferase small (RefSeq), at 3,995,499 to 3,996,224
_3333
Shewana3_3334: Shewana3_3334 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 3,996,281 to 3,997,276
_3334
Position (kb)
3995
3996
3997 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3994.511 kb on - strand, within Shewana3_3332 at 3994.553 kb on + strand, within Shewana3_3332 at 3994.631 kb on + strand, within Shewana3_3332 at 3994.720 kb on - strand, within Shewana3_3332 at 3994.746 kb on + strand, within Shewana3_3332 at 3994.760 kb on - strand, within Shewana3_3332 at 3994.765 kb on - strand, within Shewana3_3332 at 3994.806 kb on + strand, within Shewana3_3332 at 3994.844 kb on - strand at 3994.941 kb on + strand at 3995.560 kb on - strand at 3995.602 kb on - strand, within Shewana3_3333 at 3995.660 kb on + strand, within Shewana3_3333 at 3995.843 kb on + strand, within Shewana3_3333 at 3995.850 kb on - strand, within Shewana3_3333 at 3995.935 kb on + strand, within Shewana3_3333 at 3995.980 kb on + strand, within Shewana3_3333 at 3996.070 kb on - strand, within Shewana3_3333 at 3996.144 kb on + strand, within Shewana3_3333 at 3996.218 kb on + strand at 3996.226 kb on - strand at 3996.237 kb on - strand at 3996.383 kb on + strand, within Shewana3_3334 at 3996.575 kb on - strand, within Shewana3_3334 at 3996.678 kb on - strand, within Shewana3_3334 at 3996.799 kb on + strand, within Shewana3_3334 at 3996.807 kb on - strand, within Shewana3_3334 at 3996.807 kb on - strand, within Shewana3_3334 at 3996.807 kb on - strand, within Shewana3_3334 at 3996.957 kb on - strand, within Shewana3_3334 at 3997.012 kb on - strand, within Shewana3_3334 at 3997.142 kb on + strand, within Shewana3_3334
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 3,994,511 - Shewana3_3332 0.68 -2.2 3,994,553 + Shewana3_3332 0.71 -5.0 3,994,631 + Shewana3_3332 0.76 -1.4 3,994,720 - Shewana3_3332 0.83 -2.5 3,994,746 + Shewana3_3332 0.84 -1.5 3,994,760 - Shewana3_3332 0.85 -1.1 3,994,765 - Shewana3_3332 0.86 -1.8 3,994,806 + Shewana3_3332 0.89 -2.8 3,994,844 - -0.6 3,994,941 + -0.2 3,995,560 - +0.5 3,995,602 - Shewana3_3333 0.14 -0.9 3,995,660 + Shewana3_3333 0.22 +0.0 3,995,843 + Shewana3_3333 0.47 +0.9 3,995,850 - Shewana3_3333 0.48 +0.7 3,995,935 + Shewana3_3333 0.60 -1.6 3,995,980 + Shewana3_3333 0.66 -0.2 3,996,070 - Shewana3_3333 0.79 +0.9 3,996,144 + Shewana3_3333 0.89 +1.0 3,996,218 + -2.1 3,996,226 - -2.4 3,996,237 - -2.4 3,996,383 + Shewana3_3334 0.10 +0.3 3,996,575 - Shewana3_3334 0.30 +0.1 3,996,678 - Shewana3_3334 0.40 +0.2 3,996,799 + Shewana3_3334 0.52 -2.0 3,996,807 - Shewana3_3334 0.53 +0.1 3,996,807 - Shewana3_3334 0.53 -1.8 3,996,807 - Shewana3_3334 0.53 +0.5 3,996,957 - Shewana3_3334 0.68 +0.6 3,997,012 - Shewana3_3334 0.73 -1.6 3,997,142 + Shewana3_3334 0.86 +0.6
Or see this region's nucleotide sequence