Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3005 and Shewana3_3006 are separated by 255 nucleotides Shewana3_3006 and Shewana3_3007 are separated by 332 nucleotides
Shewana3_3005: Shewana3_3005 - permease YjgP/YjgQ family protein (RefSeq), at 3,608,810 to 3,609,922
_3005
Shewana3_3006: Shewana3_3006 - leucyl aminopeptidase (RefSeq), at 3,610,178 to 3,611,686
_3006
Shewana3_3007: Shewana3_3007 - chorismate mutase / prephenate dehydratase (RefSeq), at 3,612,019 to 3,614,022
_3007
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3610.110 kb on - strand at 3610.336 kb on + strand, within Shewana3_3006 at 3610.448 kb on - strand, within Shewana3_3006 at 3610.619 kb on + strand, within Shewana3_3006 at 3610.619 kb on + strand, within Shewana3_3006 at 3610.875 kb on + strand, within Shewana3_3006 at 3610.985 kb on + strand, within Shewana3_3006 at 3611.226 kb on - strand, within Shewana3_3006 at 3611.258 kb on + strand, within Shewana3_3006 at 3611.354 kb on + strand, within Shewana3_3006 at 3611.449 kb on + strand, within Shewana3_3006 at 3611.575 kb on - strand at 3611.588 kb on + strand at 3611.588 kb on + strand at 3611.921 kb on + strand at 3611.956 kb on - strand at 3612.043 kb on - strand at 3612.064 kb on - strand at 3612.071 kb on + strand at 3612.106 kb on + strand at 3612.113 kb on + strand at 3612.121 kb on - strand at 3612.538 kb on - strand, within Shewana3_3007
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 3,610,110 - -2.5 3,610,336 + Shewana3_3006 0.10 -5.1 3,610,448 - Shewana3_3006 0.18 -4.5 3,610,619 + Shewana3_3006 0.29 -4.2 3,610,619 + Shewana3_3006 0.29 -5.8 3,610,875 + Shewana3_3006 0.46 -5.1 3,610,985 + Shewana3_3006 0.53 -4.3 3,611,226 - Shewana3_3006 0.69 -2.3 3,611,258 + Shewana3_3006 0.72 -4.3 3,611,354 + Shewana3_3006 0.78 -3.7 3,611,449 + Shewana3_3006 0.84 -4.8 3,611,575 - -5.4 3,611,588 + -4.0 3,611,588 + -4.9 3,611,921 + -5.3 3,611,956 - -3.9 3,612,043 - -3.8 3,612,064 - -4.9 3,612,071 + -3.6 3,612,106 + -5.3 3,612,113 + -4.4 3,612,121 - -5.8 3,612,538 - Shewana3_3007 0.26 -5.2
Or see this region's nucleotide sequence