Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2573 and Shewana3_2574 are separated by 83 nucleotides Shewana3_2574 and Shewana3_2575 overlap by 20 nucleotides Shewana3_2575 and Shewana3_2576 are separated by 73 nucleotides
Shewana3_2573: Shewana3_2573 - Cytidine deaminase (EC 3.5.4.5) (from data) , at 3,077,679 to 3,078,569
_2573
Shewana3_2574: Shewana3_2574 - hypothetical protein (RefSeq), at 3,078,653 to 3,078,868
_2574
Shewana3_2575: Shewana3_2575 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,078,849 to 3,079,196
_2575
Shewana3_2576: Shewana3_2576 - hypothetical protein (RefSeq), at 3,079,270 to 3,079,974
_2576
Position (kb)
3078
3079 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3077.701 kb on + strand at 3077.935 kb on + strand, within Shewana3_2573 at 3077.941 kb on + strand, within Shewana3_2573 at 3077.941 kb on + strand, within Shewana3_2573 at 3077.949 kb on - strand, within Shewana3_2573 at 3077.966 kb on + strand, within Shewana3_2573 at 3077.966 kb on + strand, within Shewana3_2573 at 3077.974 kb on - strand, within Shewana3_2573 at 3078.033 kb on + strand, within Shewana3_2573 at 3078.144 kb on - strand, within Shewana3_2573 at 3078.144 kb on - strand, within Shewana3_2573 at 3078.151 kb on + strand, within Shewana3_2573 at 3078.276 kb on + strand, within Shewana3_2573 at 3078.284 kb on - strand, within Shewana3_2573 at 3078.374 kb on + strand, within Shewana3_2573 at 3078.469 kb on + strand, within Shewana3_2573 at 3078.584 kb on + strand at 3078.653 kb on - strand at 3078.851 kb on + strand at 3079.281 kb on - strand at 3079.731 kb on - strand, within Shewana3_2576 at 3079.818 kb on - strand, within Shewana3_2576 at 3079.842 kb on - strand, within Shewana3_2576 at 3079.845 kb on - strand, within Shewana3_2576
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 3,077,701 + -1.7 3,077,935 + Shewana3_2573 0.29 +0.6 3,077,941 + Shewana3_2573 0.29 +0.8 3,077,941 + Shewana3_2573 0.29 -0.4 3,077,949 - Shewana3_2573 0.30 +0.3 3,077,966 + Shewana3_2573 0.32 +0.5 3,077,966 + Shewana3_2573 0.32 +2.1 3,077,974 - Shewana3_2573 0.33 -0.9 3,078,033 + Shewana3_2573 0.40 +0.6 3,078,144 - Shewana3_2573 0.52 +0.5 3,078,144 - Shewana3_2573 0.52 +0.6 3,078,151 + Shewana3_2573 0.53 -1.8 3,078,276 + Shewana3_2573 0.67 +0.3 3,078,284 - Shewana3_2573 0.68 -0.4 3,078,374 + Shewana3_2573 0.78 -0.3 3,078,469 + Shewana3_2573 0.89 -0.1 3,078,584 + -1.9 3,078,653 - +0.9 3,078,851 + -0.5 3,079,281 - +0.9 3,079,731 - Shewana3_2576 0.65 -0.5 3,079,818 - Shewana3_2576 0.78 -1.8 3,079,842 - Shewana3_2576 0.81 +0.4 3,079,845 - Shewana3_2576 0.82 +0.4
Or see this region's nucleotide sequence