Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2338

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2336 and Shewana3_2337 are separated by 95 nucleotidesShewana3_2337 and Shewana3_2338 are separated by 244 nucleotidesShewana3_2338 and Shewana3_2339 are separated by 129 nucleotides Shewana3_2336: Shewana3_2336 - protein tyrosine phosphatase (RefSeq), at 2,810,738 to 2,811,154 _2336 Shewana3_2337: Shewana3_2337 - ArsR family transcriptional regulator (RefSeq), at 2,811,250 to 2,811,537 _2337 Shewana3_2338: Shewana3_2338 - permease (RefSeq), at 2,811,782 to 2,812,858 _2338 Shewana3_2339: Shewana3_2339 - glutathione synthase (RefSeq), at 2,812,988 to 2,814,445 _2339 Position (kb) 2811 2812 2813Strain fitness (log2 ratio) -3 -2 -1 0 1at 2810.804 kb on + strand, within Shewana3_2336at 2810.855 kb on - strand, within Shewana3_2336at 2811.036 kb on + strandat 2811.244 kb on - strandat 2811.417 kb on - strand, within Shewana3_2337at 2811.485 kb on - strand, within Shewana3_2337at 2811.629 kb on + strandat 2811.656 kb on - strandat 2811.848 kb on - strandat 2811.949 kb on + strand, within Shewana3_2338at 2812.157 kb on + strand, within Shewana3_2338at 2812.228 kb on + strand, within Shewana3_2338at 2812.639 kb on - strand, within Shewana3_2338at 2812.835 kb on + strandat 2812.910 kb on - strandat 2812.922 kb on + strandat 2813.429 kb on - strand, within Shewana3_2339at 2813.469 kb on + strand, within Shewana3_2339at 2813.738 kb on - strand, within Shewana3_2339

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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2,810,804 + Shewana3_2336 0.16 -3.2
2,810,855 - Shewana3_2336 0.28 -2.3
2,811,036 + -1.3
2,811,244 - -0.3
2,811,417 - Shewana3_2337 0.58 +0.3
2,811,485 - Shewana3_2337 0.82 +0.3
2,811,629 + -1.5
2,811,656 - +0.2
2,811,848 - +0.8
2,811,949 + Shewana3_2338 0.16 -0.0
2,812,157 + Shewana3_2338 0.35 -0.0
2,812,228 + Shewana3_2338 0.41 -1.4
2,812,639 - Shewana3_2338 0.80 -2.0
2,812,835 + -1.7
2,812,910 - -0.4
2,812,922 + +1.7
2,813,429 - Shewana3_2339 0.30 +1.1
2,813,469 + Shewana3_2339 0.33 +0.9
2,813,738 - Shewana3_2339 0.51 +0.5

Or see this region's nucleotide sequence