Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1921

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1920 and Shewana3_1921 are separated by 1 nucleotidesShewana3_1921 and Shewana3_1922 are separated by 215 nucleotides Shewana3_1920: Shewana3_1920 - hypothetical protein (RefSeq), at 2,282,229 to 2,283,893 _1920 Shewana3_1921: Shewana3_1921 - hypothetical protein (RefSeq), at 2,283,895 to 2,284,494 _1921 Shewana3_1922: Shewana3_1922 - sodium/sulphate symporter (RefSeq), at 2,284,710 to 2,286,098 _1922 Position (kb) 2283 2284 2285Strain fitness (log2 ratio) -3 -2 -1 0 1at 2282.938 kb on + strand, within Shewana3_1920at 2282.987 kb on + strand, within Shewana3_1920at 2283.186 kb on - strand, within Shewana3_1920at 2283.191 kb on + strand, within Shewana3_1920at 2283.353 kb on - strand, within Shewana3_1920at 2283.565 kb on + strand, within Shewana3_1920at 2283.702 kb on + strand, within Shewana3_1920at 2283.777 kb on - strandat 2283.963 kb on - strand, within Shewana3_1921at 2284.463 kb on + strandat 2284.463 kb on + strandat 2284.486 kb on + strandat 2284.588 kb on + strandat 2284.599 kb on + strandat 2284.707 kb on + strandat 2284.735 kb on + strandat 2284.776 kb on - strandat 2284.792 kb on - strandat 2284.922 kb on + strand, within Shewana3_1922at 2285.094 kb on + strand, within Shewana3_1922at 2285.237 kb on + strand, within Shewana3_1922at 2285.460 kb on - strand, within Shewana3_1922

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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2,282,938 + Shewana3_1920 0.43 -0.3
2,282,987 + Shewana3_1920 0.46 -1.6
2,283,186 - Shewana3_1920 0.57 -2.0
2,283,191 + Shewana3_1920 0.58 +0.6
2,283,353 - Shewana3_1920 0.68 -2.6
2,283,565 + Shewana3_1920 0.80 +0.6
2,283,702 + Shewana3_1920 0.88 +0.9
2,283,777 - -2.9
2,283,963 - Shewana3_1921 0.11 +1.1
2,284,463 + +1.0
2,284,463 + +0.6
2,284,486 + -2.2
2,284,588 + -1.9
2,284,599 + -0.0
2,284,707 + -3.0
2,284,735 + -2.0
2,284,776 - +0.8
2,284,792 - -1.1
2,284,922 + Shewana3_1922 0.15 -0.0
2,285,094 + Shewana3_1922 0.28 +0.2
2,285,237 + Shewana3_1922 0.38 -0.4
2,285,460 - Shewana3_1922 0.54 +0.6

Or see this region's nucleotide sequence