Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0743 and Shewana3_0744 are separated by 202 nucleotides Shewana3_0744 and Shewana3_0745 are separated by 16 nucleotides Shewana3_0745 and Shewana3_0746 are separated by 157 nucleotides Shewana3_0746 and Shewana3_0747 are separated by 3 nucleotides
Shewana3_0743: Shewana3_0743 - molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq), at 862,495 to 863,280
_0743
Shewana3_0744: Shewana3_0744 - ModE family transcriptional regulator (RefSeq), at 863,483 to 864,262
_0744
Shewana3_0745: Shewana3_0745 - putative iron-sulfur cluster binding protein (RefSeq), at 864,279 to 865,460
_0745
Shewana3_0746: Shewana3_0746 - extracellular solute-binding protein (RefSeq), at 865,618 to 866,445
_0746
Shewana3_0747: Shewana3_0747 - diguanylate cyclase (RefSeq), at 866,449 to 868,389
_0747
Position (kb)
864
865
866 Strain fitness (log2 ratio)
-2
-1
0
1 at 863.467 kb on - strand at 863.737 kb on + strand, within Shewana3_0744 at 863.923 kb on - strand, within Shewana3_0744 at 863.924 kb on - strand, within Shewana3_0744 at 864.047 kb on + strand, within Shewana3_0744 at 864.110 kb on - strand, within Shewana3_0744 at 864.206 kb on - strand at 864.471 kb on + strand, within Shewana3_0745 at 864.477 kb on + strand, within Shewana3_0745 at 864.479 kb on - strand, within Shewana3_0745 at 864.786 kb on - strand, within Shewana3_0745 at 864.820 kb on - strand, within Shewana3_0745 at 864.951 kb on + strand, within Shewana3_0745 at 865.149 kb on + strand, within Shewana3_0745 at 865.157 kb on - strand, within Shewana3_0745 at 865.157 kb on - strand, within Shewana3_0745 at 865.392 kb on - strand at 865.510 kb on - strand at 865.530 kb on - strand at 865.629 kb on + strand at 865.655 kb on - strand at 865.672 kb on + strand at 865.672 kb on + strand at 865.672 kb on + strand at 865.763 kb on - strand, within Shewana3_0746 at 865.780 kb on - strand, within Shewana3_0746 at 865.785 kb on - strand, within Shewana3_0746 at 865.813 kb on - strand, within Shewana3_0746 at 865.878 kb on + strand, within Shewana3_0746 at 865.886 kb on - strand, within Shewana3_0746 at 865.919 kb on - strand, within Shewana3_0746 at 866.325 kb on - strand, within Shewana3_0746
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 863,467 - -2.4 863,737 + Shewana3_0744 0.33 -2.4 863,923 - Shewana3_0744 0.56 -1.2 863,924 - Shewana3_0744 0.57 -1.8 864,047 + Shewana3_0744 0.72 +0.9 864,110 - Shewana3_0744 0.80 +0.4 864,206 - -1.4 864,471 + Shewana3_0745 0.16 +1.0 864,477 + Shewana3_0745 0.17 +0.7 864,479 - Shewana3_0745 0.17 +0.9 864,786 - Shewana3_0745 0.43 +0.3 864,820 - Shewana3_0745 0.46 +0.6 864,951 + Shewana3_0745 0.57 -2.1 865,149 + Shewana3_0745 0.74 +0.7 865,157 - Shewana3_0745 0.74 +0.1 865,157 - Shewana3_0745 0.74 -0.2 865,392 - +0.3 865,510 - +1.0 865,530 - +0.9 865,629 + +0.5 865,655 - +0.2 865,672 + +0.1 865,672 + -1.4 865,672 + -1.5 865,763 - Shewana3_0746 0.18 +0.7 865,780 - Shewana3_0746 0.20 -1.3 865,785 - Shewana3_0746 0.20 -0.4 865,813 - Shewana3_0746 0.24 +1.1 865,878 + Shewana3_0746 0.31 +0.3 865,886 - Shewana3_0746 0.32 -0.3 865,919 - Shewana3_0746 0.36 +0.7 866,325 - Shewana3_0746 0.85 +0.3
Or see this region's nucleotide sequence