Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4163 and Shewana3_4164 are separated by 171 nucleotides Shewana3_4164 and Shewana3_4165 are separated by 428 nucleotides Shewana3_4165 and Shewana3_4166 are separated by 29 nucleotides
Shewana3_4163: Shewana3_4163 - restriction modification system DNA specificity subunit (RefSeq), at 25,917 to 27,134
_4163
Shewana3_4164: Shewana3_4164 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 27,306 to 30,536
_4164
Shewana3_4165: Shewana3_4165 - hypothetical protein (RefSeq), at 30,965 to 31,375
_4165
Shewana3_4166: Shewana3_4166 - hypothetical protein (RefSeq), at 31,405 to 32,007
_4166
Position (kb)
27
28
29
30
31 Strain fitness (log2 ratio)
-2
-1
0
1 at 26.566 kb on - strand, within Shewana3_4163 at 26.583 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.632 kb on - strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 27.010 kb on + strand, within Shewana3_4163 at 27.582 kb on - strand at 27.860 kb on + strand, within Shewana3_4164 at 27.911 kb on - strand, within Shewana3_4164 at 28.017 kb on + strand, within Shewana3_4164 at 28.025 kb on - strand, within Shewana3_4164 at 28.052 kb on + strand, within Shewana3_4164 at 28.060 kb on - strand, within Shewana3_4164 at 28.756 kb on + strand, within Shewana3_4164 at 28.756 kb on + strand, within Shewana3_4164 at 28.937 kb on - strand, within Shewana3_4164 at 29.194 kb on + strand, within Shewana3_4164 at 29.195 kb on + strand, within Shewana3_4164 at 29.477 kb on - strand, within Shewana3_4164 at 29.506 kb on - strand, within Shewana3_4164 at 29.640 kb on - strand, within Shewana3_4164 at 29.709 kb on + strand, within Shewana3_4164 at 29.715 kb on - strand, within Shewana3_4164 at 29.774 kb on + strand, within Shewana3_4164 at 29.830 kb on - strand, within Shewana3_4164 at 29.898 kb on - strand, within Shewana3_4164 at 29.900 kb on + strand, within Shewana3_4164 at 30.002 kb on + strand, within Shewana3_4164 at 30.005 kb on - strand, within Shewana3_4164 at 30.122 kb on + strand, within Shewana3_4164 at 30.259 kb on - strand at 30.278 kb on - strand at 30.285 kb on - strand at 30.319 kb on - strand at 30.380 kb on - strand at 30.594 kb on - strand at 30.633 kb on + strand at 30.661 kb on - strand at 30.684 kb on - strand at 30.846 kb on + strand at 30.846 kb on + strand at 30.854 kb on - strand at 31.205 kb on + strand, within Shewana3_4165 at 31.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 26,566 - Shewana3_4163 0.53 +0.9 26,583 + Shewana3_4163 0.55 -0.0 26,590 + Shewana3_4163 0.55 +0.8 26,590 + Shewana3_4163 0.55 -0.0 26,598 - Shewana3_4163 0.56 -0.0 26,598 - Shewana3_4163 0.56 -0.4 26,632 - Shewana3_4163 0.59 -1.5 26,802 + Shewana3_4163 0.73 +0.2 26,802 + Shewana3_4163 0.73 -0.2 27,010 + Shewana3_4163 0.90 -1.8 27,582 - +0.5 27,860 + Shewana3_4164 0.17 +0.4 27,911 - Shewana3_4164 0.19 -1.9 28,017 + Shewana3_4164 0.22 -1.9 28,025 - Shewana3_4164 0.22 -0.4 28,052 + Shewana3_4164 0.23 +0.6 28,060 - Shewana3_4164 0.23 -0.2 28,756 + Shewana3_4164 0.45 +0.1 28,756 + Shewana3_4164 0.45 +0.5 28,937 - Shewana3_4164 0.50 -1.7 29,194 + Shewana3_4164 0.58 +0.7 29,195 + Shewana3_4164 0.58 +1.3 29,477 - Shewana3_4164 0.67 -1.3 29,506 - Shewana3_4164 0.68 +1.5 29,640 - Shewana3_4164 0.72 -1.3 29,709 + Shewana3_4164 0.74 -2.2 29,715 - Shewana3_4164 0.75 -1.1 29,774 + Shewana3_4164 0.76 +1.1 29,830 - Shewana3_4164 0.78 +0.3 29,898 - Shewana3_4164 0.80 -0.1 29,900 + Shewana3_4164 0.80 -0.9 30,002 + Shewana3_4164 0.83 +0.9 30,005 - Shewana3_4164 0.84 -0.7 30,122 + Shewana3_4164 0.87 +0.7 30,259 - +0.5 30,278 - +0.0 30,285 - +0.4 30,319 - +0.7 30,380 - -2.0 30,594 - -1.6 30,633 + -1.9 30,661 - +0.6 30,684 - -2.3 30,846 + +0.5 30,846 + +0.7 30,854 - -0.1 31,205 + Shewana3_4165 0.58 -1.9 31,369 - +0.4
Or see this region's nucleotide sequence