Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4164

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4163 and Shewana3_4164 are separated by 171 nucleotidesShewana3_4164 and Shewana3_4165 are separated by 428 nucleotidesShewana3_4165 and Shewana3_4166 are separated by 29 nucleotides Shewana3_4163: Shewana3_4163 - restriction modification system DNA specificity subunit (RefSeq), at 25,917 to 27,134 _4163 Shewana3_4164: Shewana3_4164 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 27,306 to 30,536 _4164 Shewana3_4165: Shewana3_4165 - hypothetical protein (RefSeq), at 30,965 to 31,375 _4165 Shewana3_4166: Shewana3_4166 - hypothetical protein (RefSeq), at 31,405 to 32,007 _4166 Position (kb) 27 28 29 30 31Strain fitness (log2 ratio) -2 -1 0 1at 26.566 kb on - strand, within Shewana3_4163at 26.583 kb on + strand, within Shewana3_4163at 26.590 kb on + strand, within Shewana3_4163at 26.590 kb on + strand, within Shewana3_4163at 26.598 kb on - strand, within Shewana3_4163at 26.598 kb on - strand, within Shewana3_4163at 26.632 kb on - strand, within Shewana3_4163at 26.802 kb on + strand, within Shewana3_4163at 26.802 kb on + strand, within Shewana3_4163at 27.010 kb on + strand, within Shewana3_4163at 27.582 kb on - strandat 27.860 kb on + strand, within Shewana3_4164at 27.911 kb on - strand, within Shewana3_4164at 28.017 kb on + strand, within Shewana3_4164at 28.025 kb on - strand, within Shewana3_4164at 28.052 kb on + strand, within Shewana3_4164at 28.060 kb on - strand, within Shewana3_4164at 28.756 kb on + strand, within Shewana3_4164at 28.756 kb on + strand, within Shewana3_4164at 28.937 kb on - strand, within Shewana3_4164at 29.194 kb on + strand, within Shewana3_4164at 29.195 kb on + strand, within Shewana3_4164at 29.477 kb on - strand, within Shewana3_4164at 29.506 kb on - strand, within Shewana3_4164at 29.640 kb on - strand, within Shewana3_4164at 29.709 kb on + strand, within Shewana3_4164at 29.715 kb on - strand, within Shewana3_4164at 29.774 kb on + strand, within Shewana3_4164at 29.830 kb on - strand, within Shewana3_4164at 29.898 kb on - strand, within Shewana3_4164at 29.900 kb on + strand, within Shewana3_4164at 30.002 kb on + strand, within Shewana3_4164at 30.005 kb on - strand, within Shewana3_4164at 30.122 kb on + strand, within Shewana3_4164at 30.259 kb on - strandat 30.278 kb on - strandat 30.285 kb on - strandat 30.319 kb on - strandat 30.380 kb on - strandat 30.594 kb on - strandat 30.633 kb on + strandat 30.661 kb on - strandat 30.684 kb on - strandat 30.846 kb on + strandat 30.846 kb on + strandat 30.854 kb on - strandat 31.205 kb on + strand, within Shewana3_4165at 31.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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26,566 - Shewana3_4163 0.53 +0.9
26,583 + Shewana3_4163 0.55 -0.0
26,590 + Shewana3_4163 0.55 +0.8
26,590 + Shewana3_4163 0.55 -0.0
26,598 - Shewana3_4163 0.56 -0.0
26,598 - Shewana3_4163 0.56 -0.4
26,632 - Shewana3_4163 0.59 -1.5
26,802 + Shewana3_4163 0.73 +0.2
26,802 + Shewana3_4163 0.73 -0.2
27,010 + Shewana3_4163 0.90 -1.8
27,582 - +0.5
27,860 + Shewana3_4164 0.17 +0.4
27,911 - Shewana3_4164 0.19 -1.9
28,017 + Shewana3_4164 0.22 -1.9
28,025 - Shewana3_4164 0.22 -0.4
28,052 + Shewana3_4164 0.23 +0.6
28,060 - Shewana3_4164 0.23 -0.2
28,756 + Shewana3_4164 0.45 +0.1
28,756 + Shewana3_4164 0.45 +0.5
28,937 - Shewana3_4164 0.50 -1.7
29,194 + Shewana3_4164 0.58 +0.7
29,195 + Shewana3_4164 0.58 +1.3
29,477 - Shewana3_4164 0.67 -1.3
29,506 - Shewana3_4164 0.68 +1.5
29,640 - Shewana3_4164 0.72 -1.3
29,709 + Shewana3_4164 0.74 -2.2
29,715 - Shewana3_4164 0.75 -1.1
29,774 + Shewana3_4164 0.76 +1.1
29,830 - Shewana3_4164 0.78 +0.3
29,898 - Shewana3_4164 0.80 -0.1
29,900 + Shewana3_4164 0.80 -0.9
30,002 + Shewana3_4164 0.83 +0.9
30,005 - Shewana3_4164 0.84 -0.7
30,122 + Shewana3_4164 0.87 +0.7
30,259 - +0.5
30,278 - +0.0
30,285 - +0.4
30,319 - +0.7
30,380 - -2.0
30,594 - -1.6
30,633 + -1.9
30,661 - +0.6
30,684 - -2.3
30,846 + +0.5
30,846 + +0.7
30,854 - -0.1
31,205 + Shewana3_4165 0.58 -1.9
31,369 - +0.4

Or see this region's nucleotide sequence