Experiment: L-Isoleucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4162 and Shewana3_4163 are separated by 1 nucleotides Shewana3_4163 and Shewana3_4164 are separated by 171 nucleotides
Shewana3_4162: Shewana3_4162 - type I restriction-modification system, M subunit (RefSeq), at 23,291 to 25,915
_4162
Shewana3_4163: Shewana3_4163 - restriction modification system DNA specificity subunit (RefSeq), at 25,917 to 27,134
_4163
Shewana3_4164: Shewana3_4164 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 27,306 to 30,536
_4164
Position (kb)
25
26
27
28 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 25.016 kb on + strand, within Shewana3_4162 at 25.082 kb on + strand, within Shewana3_4162 at 25.090 kb on - strand, within Shewana3_4162 at 25.090 kb on - strand, within Shewana3_4162 at 25.100 kb on - strand, within Shewana3_4162 at 25.137 kb on + strand, within Shewana3_4162 at 25.178 kb on + strand, within Shewana3_4162 at 25.202 kb on - strand, within Shewana3_4162 at 25.285 kb on - strand, within Shewana3_4162 at 25.412 kb on + strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.420 kb on - strand, within Shewana3_4162 at 25.543 kb on - strand, within Shewana3_4162 at 25.864 kb on - strand at 25.886 kb on - strand at 25.900 kb on + strand at 25.908 kb on - strand at 25.966 kb on - strand at 25.966 kb on - strand at 26.126 kb on + strand, within Shewana3_4163 at 26.134 kb on - strand, within Shewana3_4163 at 26.278 kb on + strand, within Shewana3_4163 at 26.566 kb on - strand, within Shewana3_4163 at 26.583 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.590 kb on + strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.598 kb on - strand, within Shewana3_4163 at 26.632 kb on - strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 26.802 kb on + strand, within Shewana3_4163 at 27.010 kb on + strand, within Shewana3_4163 at 27.582 kb on - strand at 27.860 kb on + strand, within Shewana3_4164 at 27.911 kb on - strand, within Shewana3_4164 at 28.017 kb on + strand, within Shewana3_4164 at 28.025 kb on - strand, within Shewana3_4164 at 28.052 kb on + strand, within Shewana3_4164 at 28.060 kb on - strand, within Shewana3_4164
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (C) remove 25,016 + Shewana3_4162 0.66 +0.6 25,082 + Shewana3_4162 0.68 +1.4 25,090 - Shewana3_4162 0.69 +0.7 25,090 - Shewana3_4162 0.69 -2.0 25,100 - Shewana3_4162 0.69 +0.5 25,137 + Shewana3_4162 0.70 +0.7 25,178 + Shewana3_4162 0.72 +0.4 25,202 - Shewana3_4162 0.73 +0.9 25,285 - Shewana3_4162 0.76 +0.1 25,412 + Shewana3_4162 0.81 +0.1 25,420 - Shewana3_4162 0.81 +0.5 25,420 - Shewana3_4162 0.81 -0.9 25,420 - Shewana3_4162 0.81 +0.9 25,420 - Shewana3_4162 0.81 -3.0 25,543 - Shewana3_4162 0.86 +1.1 25,864 - -2.1 25,886 - -0.0 25,900 + -2.1 25,908 - +0.9 25,966 - +1.0 25,966 - -0.2 26,126 + Shewana3_4163 0.17 +0.5 26,134 - Shewana3_4163 0.18 +0.8 26,278 + Shewana3_4163 0.30 +1.1 26,566 - Shewana3_4163 0.53 +0.9 26,583 + Shewana3_4163 0.55 -0.0 26,590 + Shewana3_4163 0.55 +0.8 26,590 + Shewana3_4163 0.55 -0.0 26,598 - Shewana3_4163 0.56 -0.0 26,598 - Shewana3_4163 0.56 -0.4 26,632 - Shewana3_4163 0.59 -1.5 26,802 + Shewana3_4163 0.73 +0.2 26,802 + Shewana3_4163 0.73 -0.2 27,010 + Shewana3_4163 0.90 -1.8 27,582 - +0.5 27,860 + Shewana3_4164 0.17 +0.4 27,911 - Shewana3_4164 0.19 -1.9 28,017 + Shewana3_4164 0.22 -1.9 28,025 - Shewana3_4164 0.22 -0.4 28,052 + Shewana3_4164 0.23 +0.6 28,060 - Shewana3_4164 0.23 -0.2
Or see this region's nucleotide sequence