Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2777 and Shew_2778 are separated by 84 nucleotides Shew_2778 and Shew_2779 are separated by 327 nucleotides
Shew_2777: Shew_2777 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,283,298 to 3,284,653
_2777
Shew_2778: Shew_2778 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,284,738 to 3,287,770
_2778
Shew_2779: Shew_2779 - amino acid ABC transporter (RefSeq), at 3,288,098 to 3,288,907
_2779
Position (kb)
3284
3285
3286
3287
3288 Strain fitness (log2 ratio)
-1
0
1 at 3283.739 kb on - strand, within Shew_2777 at 3283.764 kb on - strand, within Shew_2777 at 3283.788 kb on + strand, within Shew_2777 at 3283.788 kb on + strand, within Shew_2777 at 3283.788 kb on + strand, within Shew_2777 at 3283.796 kb on - strand, within Shew_2777 at 3284.049 kb on + strand, within Shew_2777 at 3284.049 kb on + strand, within Shew_2777 at 3284.290 kb on - strand, within Shew_2777 at 3284.494 kb on - strand, within Shew_2777 at 3284.731 kb on + strand at 3284.739 kb on - strand at 3284.810 kb on - strand at 3285.060 kb on - strand, within Shew_2778 at 3285.094 kb on + strand, within Shew_2778 at 3285.328 kb on + strand, within Shew_2778 at 3285.541 kb on + strand, within Shew_2778 at 3285.676 kb on - strand, within Shew_2778 at 3285.676 kb on - strand, within Shew_2778 at 3285.676 kb on - strand, within Shew_2778 at 3285.722 kb on + strand, within Shew_2778 at 3285.730 kb on - strand, within Shew_2778 at 3285.744 kb on + strand, within Shew_2778 at 3285.825 kb on - strand, within Shew_2778 at 3286.495 kb on - strand, within Shew_2778 at 3286.760 kb on + strand, within Shew_2778 at 3286.789 kb on - strand, within Shew_2778 at 3287.022 kb on + strand, within Shew_2778 at 3287.415 kb on + strand, within Shew_2778 at 3287.562 kb on - strand at 3287.916 kb on - strand at 3288.391 kb on + strand, within Shew_2779
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 3,283,739 - Shew_2777 0.33 -0.1 3,283,764 - Shew_2777 0.34 +0.8 3,283,788 + Shew_2777 0.36 +0.3 3,283,788 + Shew_2777 0.36 +0.2 3,283,788 + Shew_2777 0.36 -0.1 3,283,796 - Shew_2777 0.37 +0.6 3,284,049 + Shew_2777 0.55 -0.0 3,284,049 + Shew_2777 0.55 -0.9 3,284,290 - Shew_2777 0.73 +0.7 3,284,494 - Shew_2777 0.88 +0.0 3,284,731 + +0.2 3,284,739 - +0.2 3,284,810 - +0.4 3,285,060 - Shew_2778 0.11 +0.8 3,285,094 + Shew_2778 0.12 +0.6 3,285,328 + Shew_2778 0.19 +0.4 3,285,541 + Shew_2778 0.26 -0.8 3,285,676 - Shew_2778 0.31 +0.3 3,285,676 - Shew_2778 0.31 +1.0 3,285,676 - Shew_2778 0.31 +0.7 3,285,722 + Shew_2778 0.32 +0.9 3,285,730 - Shew_2778 0.33 -0.1 3,285,744 + Shew_2778 0.33 +0.4 3,285,825 - Shew_2778 0.36 +0.0 3,286,495 - Shew_2778 0.58 -0.2 3,286,760 + Shew_2778 0.67 +0.1 3,286,789 - Shew_2778 0.68 +0.3 3,287,022 + Shew_2778 0.75 +0.1 3,287,415 + Shew_2778 0.88 +0.1 3,287,562 - +0.2 3,287,916 - +0.1 3,288,391 + Shew_2779 0.36 -0.4
Or see this region's nucleotide sequence