Strain Fitness in Shewanella loihica PV-4 around Shew_2554

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2552 and Shew_2553 are separated by 118 nucleotidesShew_2553 and Shew_2554 are separated by 80 nucleotides Shew_2552: Shew_2552 - hypothetical protein (RefSeq), at 3,009,276 to 3,009,677 _2552 Shew_2553: Shew_2553 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,009,796 to 3,010,566 _2553 Shew_2554: Shew_2554 - outer membrane protein W (RefSeq), at 3,010,647 to 3,011,288 _2554 Position (kb) 3010 3011 3012Strain fitness (log2 ratio) -1 0 1 2at 3009.958 kb on - strand, within Shew_2553at 3010.645 kb on + strandat 3010.841 kb on + strand, within Shew_2554at 3010.942 kb on - strand, within Shew_2554at 3011.694 kb on + strandat 3011.849 kb on - strandat 3012.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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3,009,958 - Shew_2553 0.21 +0.2
3,010,645 + -0.5
3,010,841 + Shew_2554 0.30 +2.0
3,010,942 - Shew_2554 0.46 +0.9
3,011,694 + +0.9
3,011,849 - +0.4
3,012,111 + +0.5

Or see this region's nucleotide sequence