Strain Fitness in Shewanella loihica PV-4 around Shew_0771

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0770 and Shew_0771 are separated by 220 nucleotidesShew_0771 and Shew_0772 are separated by 119 nucleotides Shew_0770: Shew_0770 - tyrosine recombinase XerD (RefSeq), at 879,109 to 880,020 _0770 Shew_0771: Shew_0771 - thiol:disulfide interchange protein DsbC (RefSeq), at 880,241 to 880,966 _0771 Shew_0772: Shew_0772 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 881,086 to 882,810 _0772 Position (kb) 880 881Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 879.257 kb on + strand, within Shew_0770at 879.354 kb on - strand, within Shew_0770at 879.539 kb on + strand, within Shew_0770at 879.549 kb on + strand, within Shew_0770at 879.701 kb on + strand, within Shew_0770at 879.803 kb on + strand, within Shew_0770at 879.918 kb on + strand, within Shew_0770at 879.993 kb on + strandat 880.008 kb on + strandat 880.377 kb on + strand, within Shew_0771at 880.525 kb on - strand, within Shew_0771at 880.550 kb on - strand, within Shew_0771at 880.826 kb on - strand, within Shew_0771at 880.860 kb on + strand, within Shew_0771at 880.868 kb on - strand, within Shew_0771at 880.868 kb on - strand, within Shew_0771at 881.031 kb on + strandat 881.708 kb on + strand, within Shew_0772at 881.900 kb on - strand, within Shew_0772at 881.947 kb on - strand, within Shew_0772

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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879,257 + Shew_0770 0.16 -2.8
879,354 - Shew_0770 0.27 -2.7
879,539 + Shew_0770 0.47 -4.6
879,549 + Shew_0770 0.48 -4.2
879,701 + Shew_0770 0.65 -3.4
879,803 + Shew_0770 0.76 -3.0
879,918 + Shew_0770 0.89 -4.4
879,993 + -1.7
880,008 + +0.7
880,377 + Shew_0771 0.19 +0.3
880,525 - Shew_0771 0.39 -0.4
880,550 - Shew_0771 0.43 +1.3
880,826 - Shew_0771 0.81 +0.9
880,860 + Shew_0771 0.85 +0.5
880,868 - Shew_0771 0.86 +0.3
880,868 - Shew_0771 0.86 -0.0
881,031 + +1.6
881,708 + Shew_0772 0.36 -0.8
881,900 - Shew_0772 0.47 +0.1
881,947 - Shew_0772 0.50 -0.1

Or see this region's nucleotide sequence