Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0252 and Shew_0253 overlap by 11 nucleotides Shew_0253 and Shew_0254 are separated by 19 nucleotides Shew_0254 and Shew_0255 are separated by 131 nucleotides
Shew_0252: Shew_0252 - hypothetical protein (RefSeq), at 270,902 to 271,894
_0252
Shew_0253: Shew_0253 - secretion protein HlyD family protein (RefSeq), at 271,884 to 272,990
_0253
Shew_0254: Shew_0254 - hypothetical protein (RefSeq), at 273,010 to 273,519
_0254
Shew_0255: Shew_0255 - ion transport 2 domain-containing protein (RefSeq), at 273,651 to 274,331
_0255
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1
2 at 270.908 kb on - strand at 270.955 kb on - strand at 270.955 kb on - strand at 271.000 kb on + strand at 271.015 kb on + strand, within Shew_0252 at 271.068 kb on + strand, within Shew_0252 at 271.069 kb on + strand, within Shew_0252 at 271.132 kb on + strand, within Shew_0252 at 271.140 kb on + strand, within Shew_0252 at 271.188 kb on + strand, within Shew_0252 at 271.196 kb on - strand, within Shew_0252 at 271.204 kb on + strand, within Shew_0252 at 271.209 kb on + strand, within Shew_0252 at 271.209 kb on + strand, within Shew_0252 at 271.209 kb on + strand, within Shew_0252 at 271.212 kb on - strand, within Shew_0252 at 271.217 kb on - strand, within Shew_0252 at 271.217 kb on - strand, within Shew_0252 at 271.231 kb on - strand, within Shew_0252 at 271.303 kb on + strand, within Shew_0252 at 271.320 kb on + strand, within Shew_0252 at 271.338 kb on - strand, within Shew_0252 at 271.464 kb on - strand, within Shew_0252 at 271.510 kb on + strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.518 kb on - strand, within Shew_0252 at 271.564 kb on - strand, within Shew_0252 at 271.604 kb on + strand, within Shew_0252 at 271.612 kb on + strand, within Shew_0252 at 271.657 kb on - strand, within Shew_0252 at 271.810 kb on - strand at 271.810 kb on - strand at 271.894 kb on - strand at 271.958 kb on - strand at 271.963 kb on - strand at 271.977 kb on + strand at 271.979 kb on - strand at 272.162 kb on + strand, within Shew_0253 at 272.279 kb on - strand, within Shew_0253 at 272.631 kb on - strand, within Shew_0253 at 272.669 kb on - strand, within Shew_0253 at 272.757 kb on - strand, within Shew_0253 at 272.801 kb on + strand, within Shew_0253 at 272.801 kb on + strand, within Shew_0253 at 272.809 kb on - strand, within Shew_0253 at 272.809 kb on - strand, within Shew_0253 at 272.886 kb on - strand at 272.952 kb on + strand at 272.957 kb on + strand at 272.962 kb on + strand at 272.962 kb on + strand at 272.962 kb on + strand at 272.965 kb on - strand at 272.967 kb on + strand at 272.967 kb on + strand at 272.970 kb on - strand at 272.972 kb on + strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 272.975 kb on - strand at 273.133 kb on + strand, within Shew_0254 at 273.153 kb on + strand, within Shew_0254 at 273.163 kb on + strand, within Shew_0254 at 273.163 kb on + strand, within Shew_0254 at 273.166 kb on - strand, within Shew_0254 at 273.166 kb on - strand, within Shew_0254 at 273.171 kb on - strand, within Shew_0254 at 273.171 kb on - strand, within Shew_0254 at 273.190 kb on + strand, within Shew_0254 at 273.227 kb on + strand, within Shew_0254 at 273.249 kb on + strand, within Shew_0254 at 273.313 kb on - strand, within Shew_0254 at 273.372 kb on + strand, within Shew_0254 at 273.389 kb on + strand, within Shew_0254 at 273.398 kb on - strand, within Shew_0254 at 273.407 kb on - strand, within Shew_0254 at 273.412 kb on + strand, within Shew_0254 at 273.445 kb on + strand, within Shew_0254 at 273.446 kb on - strand, within Shew_0254 at 273.514 kb on + strand at 273.514 kb on + strand at 273.514 kb on - strand at 273.519 kb on + strand at 273.521 kb on - strand at 273.527 kb on + strand at 273.527 kb on - strand at 273.585 kb on - strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.598 kb on + strand at 273.606 kb on - strand at 273.606 kb on - strand at 273.606 kb on - strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.608 kb on + strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.616 kb on - strand at 273.618 kb on - strand at 273.618 kb on - strand at 273.623 kb on - strand at 273.624 kb on + strand at 273.632 kb on + strand at 273.634 kb on + strand at 273.634 kb on + strand at 273.634 kb on + strand at 273.642 kb on - strand at 273.642 kb on - strand at 273.649 kb on - strand at 273.667 kb on - strand at 273.689 kb on + strand at 273.697 kb on - strand at 273.697 kb on - strand at 273.697 kb on - strand at 273.722 kb on - strand, within Shew_0255 at 273.722 kb on - strand, within Shew_0255 at 273.722 kb on - strand, within Shew_0255 at 273.746 kb on + strand, within Shew_0255 at 273.749 kb on - strand, within Shew_0255 at 273.756 kb on + strand, within Shew_0255 at 273.769 kb on - strand, within Shew_0255 at 273.801 kb on - strand, within Shew_0255 at 273.825 kb on - strand, within Shew_0255 at 273.872 kb on - strand, within Shew_0255 at 273.873 kb on - strand, within Shew_0255 at 273.873 kb on - strand, within Shew_0255 at 273.875 kb on + strand, within Shew_0255 at 273.921 kb on + strand, within Shew_0255 at 273.931 kb on + strand, within Shew_0255 at 273.940 kb on - strand, within Shew_0255 at 273.970 kb on - strand, within Shew_0255
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 270,908 - +0.0 270,955 - +0.2 270,955 - +0.6 271,000 + +0.4 271,015 + Shew_0252 0.11 +0.8 271,068 + Shew_0252 0.17 +0.3 271,069 + Shew_0252 0.17 +0.2 271,132 + Shew_0252 0.23 +0.1 271,140 + Shew_0252 0.24 +0.5 271,188 + Shew_0252 0.29 +0.1 271,196 - Shew_0252 0.30 +0.0 271,204 + Shew_0252 0.30 -0.2 271,209 + Shew_0252 0.31 -0.6 271,209 + Shew_0252 0.31 +0.0 271,209 + Shew_0252 0.31 +0.2 271,212 - Shew_0252 0.31 -0.3 271,217 - Shew_0252 0.32 +0.3 271,217 - Shew_0252 0.32 -0.0 271,231 - Shew_0252 0.33 +0.1 271,303 + Shew_0252 0.40 +0.4 271,320 + Shew_0252 0.42 +0.2 271,338 - Shew_0252 0.44 -0.1 271,464 - Shew_0252 0.57 +0.0 271,510 + Shew_0252 0.61 -0.1 271,518 - Shew_0252 0.62 +0.6 271,518 - Shew_0252 0.62 +0.1 271,518 - Shew_0252 0.62 -0.2 271,518 - Shew_0252 0.62 +0.0 271,518 - Shew_0252 0.62 +1.4 271,518 - Shew_0252 0.62 +0.2 271,564 - Shew_0252 0.67 +0.2 271,604 + Shew_0252 0.71 +0.1 271,612 + Shew_0252 0.72 +1.8 271,657 - Shew_0252 0.76 +0.1 271,810 - +0.3 271,810 - -1.3 271,894 - +0.4 271,958 - +0.2 271,963 - +2.0 271,977 + +0.1 271,979 - -0.1 272,162 + Shew_0253 0.25 +0.5 272,279 - Shew_0253 0.36 +0.4 272,631 - Shew_0253 0.67 +0.4 272,669 - Shew_0253 0.71 +0.1 272,757 - Shew_0253 0.79 +0.6 272,801 + Shew_0253 0.83 +0.1 272,801 + Shew_0253 0.83 +0.6 272,809 - Shew_0253 0.84 +0.1 272,809 - Shew_0253 0.84 +0.9 272,886 - +0.4 272,952 + -0.3 272,957 + +2.3 272,962 + -0.1 272,962 + +0.5 272,962 + +0.3 272,965 - -0.2 272,967 + +1.8 272,967 + +0.1 272,970 - +0.6 272,972 + +0.4 272,975 - +1.0 272,975 - -1.5 272,975 - +0.1 272,975 - -0.1 272,975 - -0.0 272,975 - +0.7 272,975 - -0.6 273,133 + Shew_0254 0.24 -0.5 273,153 + Shew_0254 0.28 +0.7 273,163 + Shew_0254 0.30 +0.3 273,163 + Shew_0254 0.30 +0.2 273,166 - Shew_0254 0.31 +0.1 273,166 - Shew_0254 0.31 -0.4 273,171 - Shew_0254 0.32 +0.3 273,171 - Shew_0254 0.32 +0.2 273,190 + Shew_0254 0.35 +0.3 273,227 + Shew_0254 0.43 +0.1 273,249 + Shew_0254 0.47 +0.3 273,313 - Shew_0254 0.59 +0.6 273,372 + Shew_0254 0.71 +0.8 273,389 + Shew_0254 0.74 -0.0 273,398 - Shew_0254 0.76 +0.0 273,407 - Shew_0254 0.78 +0.6 273,412 + Shew_0254 0.79 +0.2 273,445 + Shew_0254 0.85 -0.0 273,446 - Shew_0254 0.85 -1.6 273,514 + +0.4 273,514 + -0.0 273,514 - +0.1 273,519 + +0.3 273,521 - +0.5 273,527 + +0.4 273,527 - +0.2 273,585 - -0.2 273,598 + +0.4 273,598 + +0.0 273,598 + +0.6 273,598 + -0.2 273,598 + +0.3 273,606 - -0.4 273,606 - +0.2 273,606 - -0.5 273,608 + +0.0 273,608 + -0.0 273,608 + -0.3 273,608 + +0.2 273,608 + -0.1 273,608 + -0.1 273,608 + -0.2 273,608 + +0.3 273,608 + -0.0 273,608 + +0.4 273,608 + +0.7 273,608 + -0.7 273,608 + +0.0 273,608 + -0.4 273,608 + -2.3 273,608 + -0.0 273,608 + -0.0 273,608 + -0.7 273,608 + -0.6 273,616 - +0.3 273,616 - +0.3 273,616 - -0.4 273,616 - -0.3 273,616 - +0.0 273,616 - -1.2 273,616 - -0.5 273,616 - -0.1 273,616 - +0.1 273,616 - +0.1 273,616 - -1.0 273,616 - -0.1 273,616 - -0.1 273,616 - -0.0 273,616 - -0.1 273,616 - +0.0 273,616 - +0.2 273,616 - -0.3 273,616 - +0.3 273,616 - -0.4 273,616 - +1.6 273,616 - -0.6 273,616 - -0.3 273,618 - -0.0 273,618 - +0.1 273,623 - +0.5 273,624 + -0.2 273,632 + -0.2 273,634 + -0.0 273,634 + -0.8 273,634 + +0.4 273,642 - -0.1 273,642 - -0.3 273,649 - +0.2 273,667 - -0.1 273,689 + +1.4 273,697 - +0.7 273,697 - +0.4 273,697 - +0.8 273,722 - Shew_0255 0.10 +0.3 273,722 - Shew_0255 0.10 +0.1 273,722 - Shew_0255 0.10 +0.4 273,746 + Shew_0255 0.14 +1.0 273,749 - Shew_0255 0.14 -1.0 273,756 + Shew_0255 0.15 +0.1 273,769 - Shew_0255 0.17 -0.2 273,801 - Shew_0255 0.22 -0.2 273,825 - Shew_0255 0.26 +0.4 273,872 - Shew_0255 0.32 +0.6 273,873 - Shew_0255 0.33 +0.4 273,873 - Shew_0255 0.33 +0.3 273,875 + Shew_0255 0.33 +1.4 273,921 + Shew_0255 0.40 +0.9 273,931 + Shew_0255 0.41 +1.2 273,940 - Shew_0255 0.42 -0.0 273,970 - Shew_0255 0.47 +0.6
Or see this region's nucleotide sequence