Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19525 and RS_RS19530 are separated by 10 nucleotides RS_RS19530 and RS_RS19535 are separated by 6 nucleotides RS_RS19535 and RS_RS26090 are separated by 86 nucleotides RS_RS26090 and RS_RS19545 are separated by 135 nucleotides
RS_RS19525: RS_RS19525 - efflux RND transporter periplasmic adaptor subunit, at 613,752 to 614,966
_RS19525
RS_RS19530: RS_RS19530 - CusA/CzcA family heavy metal efflux RND transporter, at 614,977 to 618,171
_RS19530
RS_RS19535: RS_RS19535 - HIT family protein, at 618,178 to 618,612
_RS19535
RS_RS26090: RS_RS26090 - sodium/glutamate symporter, at 618,699 to 618,941
_RS26090
RS_RS19545: RS_RS19545 - DUF2087 domain-containing protein, at 619,077 to 620,300
_RS19545
Position (kb) 614
615
616
617
618
619 Strain fitness (log2 ratio) -2
-1
0
1 at 614.616 kb on + strand, within RS_RS19525 at 614.716 kb on + strand, within RS_RS19525 at 614.716 kb on + strand, within RS_RS19525 at 614.716 kb on + strand, within RS_RS19525 at 614.919 kb on + strand at 614.919 kb on + strand at 614.919 kb on + strand at 614.919 kb on + strand at 614.920 kb on - strand at 614.920 kb on - strand at 614.920 kb on - strand at 615.061 kb on + strand at 615.061 kb on + strand at 615.067 kb on + strand at 615.067 kb on + strand at 615.068 kb on - strand at 615.068 kb on - strand at 615.068 kb on - strand at 615.068 kb on - strand at 615.069 kb on + strand at 615.070 kb on - strand at 615.175 kb on + strand at 615.176 kb on - strand at 615.286 kb on + strand at 615.286 kb on + strand at 615.286 kb on + strand at 615.286 kb on + strand at 615.286 kb on + strand at 615.287 kb on - strand at 615.287 kb on - strand at 615.394 kb on + strand, within RS_RS19530 at 615.395 kb on - strand, within RS_RS19530 at 615.395 kb on - strand, within RS_RS19530 at 615.448 kb on + strand, within RS_RS19530 at 615.448 kb on + strand, within RS_RS19530 at 615.592 kb on + strand, within RS_RS19530 at 615.592 kb on + strand, within RS_RS19530 at 615.593 kb on - strand, within RS_RS19530 at 615.658 kb on + strand, within RS_RS19530 at 615.659 kb on - strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.682 kb on + strand, within RS_RS19530 at 615.964 kb on + strand, within RS_RS19530 at 615.965 kb on - strand, within RS_RS19530 at 615.965 kb on - strand, within RS_RS19530 at 616.336 kb on + strand, within RS_RS19530 at 616.337 kb on - strand, within RS_RS19530 at 616.363 kb on + strand, within RS_RS19530 at 616.552 kb on + strand, within RS_RS19530 at 616.552 kb on + strand, within RS_RS19530 at 616.553 kb on - strand, within RS_RS19530 at 616.553 kb on - strand, within RS_RS19530 at 616.861 kb on + strand, within RS_RS19530 at 616.861 kb on + strand, within RS_RS19530 at 616.861 kb on + strand, within RS_RS19530 at 616.862 kb on - strand, within RS_RS19530 at 616.978 kb on + strand, within RS_RS19530 at 617.010 kb on + strand, within RS_RS19530 at 617.276 kb on + strand, within RS_RS19530 at 617.276 kb on + strand, within RS_RS19530 at 617.277 kb on - strand, within RS_RS19530 at 617.277 kb on - strand, within RS_RS19530 at 617.386 kb on + strand, within RS_RS19530 at 617.386 kb on + strand, within RS_RS19530 at 618.278 kb on + strand, within RS_RS19535 at 618.596 kb on + strand at 618.650 kb on + strand at 618.650 kb on + strand at 618.650 kb on + strand at 618.651 kb on - strand at 618.651 kb on - strand at 618.651 kb on - strand at 618.651 kb on - strand at 618.651 kb on - strand at 618.652 kb on + strand at 618.652 kb on + strand at 618.652 kb on + strand at 618.652 kb on + strand at 618.652 kb on + strand at 618.652 kb on + strand at 618.652 kb on + strand at 618.653 kb on - strand at 618.653 kb on - strand at 618.653 kb on - strand at 618.653 kb on - strand at 618.653 kb on - strand at 619.100 kb on - strand at 619.101 kb on + strand at 619.101 kb on + strand at 619.101 kb on + strand at 619.102 kb on - strand at 619.102 kb on - strand at 619.102 kb on - strand at 619.102 kb on - strand at 619.102 kb on - strand at 619.102 kb on - strand at 619.106 kb on + strand at 619.107 kb on - strand at 619.141 kb on + strand at 619.159 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 614,616 + RS_RS19525 0.71 -0.6 614,716 + RS_RS19525 0.79 -0.9 614,716 + RS_RS19525 0.79 -0.1 614,716 + RS_RS19525 0.79 -1.3 614,919 + -0.9 614,919 + -0.3 614,919 + -0.4 614,919 + -0.2 614,920 - -1.0 614,920 - -0.2 614,920 - -1.1 615,061 + -2.1 615,061 + -0.4 615,067 + -1.6 615,067 + +0.2 615,068 - -0.6 615,068 - -0.9 615,068 - -1.3 615,068 - -0.7 615,069 + -0.7 615,070 - -1.5 615,175 + -0.8 615,176 - -1.0 615,286 + -2.0 615,286 + +0.1 615,286 + -1.7 615,286 + -1.5 615,286 + -1.8 615,287 - -1.4 615,287 - -1.7 615,394 + RS_RS19530 0.13 +1.7 615,395 - RS_RS19530 0.13 -0.7 615,395 - RS_RS19530 0.13 -0.8 615,448 + RS_RS19530 0.15 +0.2 615,448 + RS_RS19530 0.15 -1.3 615,592 + RS_RS19530 0.19 -2.1 615,592 + RS_RS19530 0.19 -1.3 615,593 - RS_RS19530 0.19 -1.3 615,658 + RS_RS19530 0.21 +0.3 615,659 - RS_RS19530 0.21 -0.6 615,682 + RS_RS19530 0.22 -1.9 615,682 + RS_RS19530 0.22 -0.5 615,682 + RS_RS19530 0.22 +0.7 615,682 + RS_RS19530 0.22 -2.3 615,682 + RS_RS19530 0.22 -1.7 615,964 + RS_RS19530 0.31 -1.1 615,965 - RS_RS19530 0.31 -0.9 615,965 - RS_RS19530 0.31 -0.8 616,336 + RS_RS19530 0.43 -1.1 616,337 - RS_RS19530 0.43 -1.0 616,363 + RS_RS19530 0.43 -1.9 616,552 + RS_RS19530 0.49 -1.4 616,552 + RS_RS19530 0.49 +0.0 616,553 - RS_RS19530 0.49 -0.6 616,553 - RS_RS19530 0.49 -0.1 616,861 + RS_RS19530 0.59 -0.8 616,861 + RS_RS19530 0.59 -0.9 616,861 + RS_RS19530 0.59 -2.1 616,862 - RS_RS19530 0.59 +0.1 616,978 + RS_RS19530 0.63 -1.0 617,010 + RS_RS19530 0.64 -1.1 617,276 + RS_RS19530 0.72 -0.3 617,276 + RS_RS19530 0.72 -0.6 617,277 - RS_RS19530 0.72 -0.8 617,277 - RS_RS19530 0.72 -0.5 617,386 + RS_RS19530 0.75 -1.5 617,386 + RS_RS19530 0.75 -1.0 618,278 + RS_RS19535 0.23 -0.1 618,596 + -0.8 618,650 + -1.0 618,650 + -1.0 618,650 + -0.5 618,651 - +0.6 618,651 - -0.8 618,651 - +0.7 618,651 - +0.7 618,651 - +0.3 618,652 + -0.6 618,652 + -0.3 618,652 + -0.8 618,652 + +0.1 618,652 + +0.1 618,652 + -0.0 618,652 + -1.2 618,653 - +0.9 618,653 - -0.2 618,653 - -0.5 618,653 - +0.3 618,653 - -2.6 619,100 - -0.8 619,101 + -0.6 619,101 + -0.1 619,101 + -0.2 619,102 - -0.1 619,102 - +0.3 619,102 - +0.1 619,102 - -0.4 619,102 - -0.4 619,102 - -0.3 619,106 + -0.5 619,107 - -0.4 619,141 + +0.1 619,159 + +0.2
Or see this region's nucleotide sequence