Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18095 and RS_RS18100 are separated by 805 nucleotides RS_RS18100 and RS_RS18105 are separated by 197 nucleotides
RS_RS18095: RS_RS18095 - gamma subclass chorismate mutase AroQ, at 242,193 to 242,783
_RS18095
RS_RS18100: RS_RS18100 - disulfide bond formation protein B, at 243,589 to 244,143
_RS18100
RS_RS18105: RS_RS18105 - aspartate aminotransferase family protein, at 244,341 to 246,851
_RS18105
Position (kb) 243
244
245 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.078 kb on + strand at 243.079 kb on - strand at 243.079 kb on - strand at 243.226 kb on - strand at 243.228 kb on + strand at 243.228 kb on + strand at 243.274 kb on - strand at 243.295 kb on - strand at 243.295 kb on - strand at 243.295 kb on - strand at 243.295 kb on - strand at 243.483 kb on + strand at 243.483 kb on + strand at 243.535 kb on - strand at 243.535 kb on - strand at 243.544 kb on + strand at 243.570 kb on + strand at 243.655 kb on + strand, within RS_RS18100 at 243.655 kb on + strand, within RS_RS18100 at 243.655 kb on + strand, within RS_RS18100 at 243.656 kb on - strand, within RS_RS18100 at 243.785 kb on - strand, within RS_RS18100 at 243.849 kb on + strand, within RS_RS18100 at 243.849 kb on + strand, within RS_RS18100 at 243.850 kb on - strand, within RS_RS18100 at 243.850 kb on - strand, within RS_RS18100 at 243.871 kb on + strand, within RS_RS18100 at 243.871 kb on + strand, within RS_RS18100 at 243.872 kb on - strand, within RS_RS18100 at 243.901 kb on + strand, within RS_RS18100 at 243.901 kb on + strand, within RS_RS18100 at 243.901 kb on + strand, within RS_RS18100 at 243.901 kb on + strand, within RS_RS18100 at 243.902 kb on - strand, within RS_RS18100 at 243.902 kb on - strand, within RS_RS18100 at 243.902 kb on - strand, within RS_RS18100 at 243.902 kb on - strand, within RS_RS18100 at 243.902 kb on - strand, within RS_RS18100 at 243.902 kb on - strand, within RS_RS18100 at 243.902 kb on - strand, within RS_RS18100 at 243.903 kb on + strand, within RS_RS18100 at 243.903 kb on + strand, within RS_RS18100 at 244.123 kb on + strand at 244.123 kb on + strand at 244.124 kb on - strand at 244.598 kb on - strand, within RS_RS18105 at 244.666 kb on + strand, within RS_RS18105 at 244.666 kb on + strand, within RS_RS18105 at 244.666 kb on + strand, within RS_RS18105 at 244.667 kb on - strand, within RS_RS18105 at 244.667 kb on - strand, within RS_RS18105 at 244.729 kb on + strand, within RS_RS18105 at 244.729 kb on + strand, within RS_RS18105 at 244.730 kb on - strand, within RS_RS18105 at 244.948 kb on - strand, within RS_RS18105
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 243,078 + -0.2 243,079 - -0.1 243,079 - +0.3 243,226 - -0.2 243,228 + -0.3 243,228 + -0.5 243,274 - +0.5 243,295 - -0.3 243,295 - +0.2 243,295 - -1.1 243,295 - -0.2 243,483 + -0.2 243,483 + +0.1 243,535 - +1.0 243,535 - -0.1 243,544 + +0.2 243,570 + +0.0 243,655 + RS_RS18100 0.12 -1.0 243,655 + RS_RS18100 0.12 -0.1 243,655 + RS_RS18100 0.12 +0.1 243,656 - RS_RS18100 0.12 -0.4 243,785 - RS_RS18100 0.35 -0.3 243,849 + RS_RS18100 0.47 -0.8 243,849 + RS_RS18100 0.47 +0.2 243,850 - RS_RS18100 0.47 +0.1 243,850 - RS_RS18100 0.47 +0.3 243,871 + RS_RS18100 0.51 -0.3 243,871 + RS_RS18100 0.51 -0.6 243,872 - RS_RS18100 0.51 -0.1 243,901 + RS_RS18100 0.56 -0.5 243,901 + RS_RS18100 0.56 -0.2 243,901 + RS_RS18100 0.56 +0.1 243,901 + RS_RS18100 0.56 +0.4 243,902 - RS_RS18100 0.56 -0.0 243,902 - RS_RS18100 0.56 +0.6 243,902 - RS_RS18100 0.56 +0.0 243,902 - RS_RS18100 0.56 -0.2 243,902 - RS_RS18100 0.56 +0.5 243,902 - RS_RS18100 0.56 +1.0 243,902 - RS_RS18100 0.56 -0.4 243,903 + RS_RS18100 0.57 +0.1 243,903 + RS_RS18100 0.57 -2.0 244,123 + +1.8 244,123 + +0.3 244,124 - +0.4 244,598 - RS_RS18105 0.10 -0.1 244,666 + RS_RS18105 0.13 +0.4 244,666 + RS_RS18105 0.13 +0.6 244,666 + RS_RS18105 0.13 +0.5 244,667 - RS_RS18105 0.13 +0.2 244,667 - RS_RS18105 0.13 +1.3 244,729 + RS_RS18105 0.15 +0.8 244,729 + RS_RS18105 0.15 +0.6 244,730 - RS_RS18105 0.15 +0.6 244,948 - RS_RS18105 0.24 +0.4
Or see this region's nucleotide sequence