Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS17305

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS17300 and RS_RS17305 are separated by 283 nucleotidesRS_RS17305 and RS_RS17310 are separated by 543 nucleotides RS_RS17300: RS_RS17300 - hypothetical protein, at 26,809 to 27,570 _RS17300 RS_RS17305: RS_RS17305 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 27,854 to 28,333 _RS17305 RS_RS17310: RS_RS17310 - porin, at 28,877 to 29,251 _RS17310 Position (kb) 27 28 29Strain fitness (log2 ratio) -1 0 1at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.893 kb on + strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.894 kb on - strand, within RS_RS17300at 26.899 kb on + strand, within RS_RS17300at 26.899 kb on + strand, within RS_RS17300at 26.900 kb on - strand, within RS_RS17300at 27.016 kb on + strand, within RS_RS17300at 27.016 kb on + strand, within RS_RS17300at 27.016 kb on + strand, within RS_RS17300at 27.017 kb on - strand, within RS_RS17300at 27.017 kb on - strand, within RS_RS17300at 27.017 kb on - strand, within RS_RS17300at 27.068 kb on - strand, within RS_RS17300at 27.068 kb on - strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.071 kb on + strand, within RS_RS17300at 27.072 kb on - strand, within RS_RS17300at 27.072 kb on - strand, within RS_RS17300at 27.072 kb on - strand, within RS_RS17300at 27.072 kb on - strand, within RS_RS17300at 27.127 kb on + strand, within RS_RS17300at 27.127 kb on + strand, within RS_RS17300at 27.127 kb on + strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.128 kb on - strand, within RS_RS17300at 27.186 kb on + strand, within RS_RS17300at 27.187 kb on - strand, within RS_RS17300at 27.187 kb on - strand, within RS_RS17300at 27.195 kb on + strand, within RS_RS17300at 27.195 kb on + strand, within RS_RS17300at 27.195 kb on + strand, within RS_RS17300at 27.196 kb on - strand, within RS_RS17300at 27.196 kb on - strand, within RS_RS17300at 27.205 kb on + strand, within RS_RS17300at 27.206 kb on - strand, within RS_RS17300at 27.206 kb on - strand, within RS_RS17300at 27.206 kb on - strand, within RS_RS17300at 27.223 kb on + strand, within RS_RS17300at 27.223 kb on + strand, within RS_RS17300at 27.224 kb on - strand, within RS_RS17300at 27.247 kb on + strand, within RS_RS17300at 27.289 kb on + strand, within RS_RS17300at 27.289 kb on + strand, within RS_RS17300at 27.289 kb on + strand, within RS_RS17300at 27.289 kb on + strand, within RS_RS17300at 27.290 kb on - strand, within RS_RS17300at 27.355 kb on + strand, within RS_RS17300at 27.355 kb on + strand, within RS_RS17300at 27.355 kb on + strand, within RS_RS17300at 27.356 kb on - strand, within RS_RS17300at 27.405 kb on + strand, within RS_RS17300at 27.406 kb on - strand, within RS_RS17300at 27.412 kb on + strand, within RS_RS17300at 27.412 kb on + strand, within RS_RS17300at 27.413 kb on - strand, within RS_RS17300at 27.484 kb on + strand, within RS_RS17300at 27.484 kb on + strand, within RS_RS17300at 27.484 kb on + strand, within RS_RS17300at 27.484 kb on + strand, within RS_RS17300at 27.485 kb on - strand, within RS_RS17300at 27.485 kb on - strand, within RS_RS17300at 27.485 kb on - strand, within RS_RS17300at 27.485 kb on - strand, within RS_RS17300at 27.485 kb on - strand, within RS_RS17300at 27.514 kb on + strandat 27.521 kb on + strandat 27.532 kb on + strandat 27.533 kb on - strandat 27.631 kb on - strandat 27.708 kb on + strandat 27.709 kb on - strandat 27.709 kb on - strandat 27.795 kb on + strandat 27.874 kb on - strandat 27.978 kb on + strand, within RS_RS17305at 27.978 kb on + strand, within RS_RS17305at 27.993 kb on + strand, within RS_RS17305at 28.029 kb on + strand, within RS_RS17305at 28.131 kb on + strand, within RS_RS17305at 28.132 kb on - strand, within RS_RS17305at 28.132 kb on - strand, within RS_RS17305at 28.255 kb on + strand, within RS_RS17305at 28.255 kb on + strandat 28.369 kb on - strandat 28.369 kb on - strandat 28.484 kb on + strandat 28.484 kb on + strandat 28.485 kb on - strandat 28.590 kb on + strandat 28.590 kb on + strandat 28.591 kb on - strandat 28.670 kb on + strandat 28.690 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.694 kb on + strandat 28.695 kb on - strandat 28.695 kb on - strandat 28.695 kb on - strandat 28.695 kb on - strandat 28.695 kb on - strandat 28.695 kb on - strandat 28.695 kb on - strandat 28.695 kb on - strandat 28.695 kb on - strandat 28.698 kb on + strandat 28.698 kb on + strandat 29.102 kb on + strand, within RS_RS17310at 29.103 kb on - strand, within RS_RS17310at 29.272 kb on + strandat 29.272 kb on + strandat 29.272 kb on + strandat 29.272 kb on + strandat 29.273 kb on - strandat 29.318 kb on + strandat 29.318 kb on + strandat 29.318 kb on + strandat 29.318 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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26,893 + RS_RS17300 0.11 +0.7
26,893 + RS_RS17300 0.11 -0.6
26,893 + RS_RS17300 0.11 -0.2
26,893 + RS_RS17300 0.11 -0.6
26,893 + RS_RS17300 0.11 -0.4
26,893 + RS_RS17300 0.11 -0.5
26,893 + RS_RS17300 0.11 +0.3
26,893 + RS_RS17300 0.11 +0.3
26,893 + RS_RS17300 0.11 -0.5
26,894 - RS_RS17300 0.11 -0.1
26,894 - RS_RS17300 0.11 +0.4
26,894 - RS_RS17300 0.11 +0.1
26,894 - RS_RS17300 0.11 -0.2
26,894 - RS_RS17300 0.11 +0.7
26,894 - RS_RS17300 0.11 +0.2
26,894 - RS_RS17300 0.11 -0.3
26,894 - RS_RS17300 0.11 +0.1
26,894 - RS_RS17300 0.11 -0.6
26,894 - RS_RS17300 0.11 +0.2
26,894 - RS_RS17300 0.11 -0.9
26,894 - RS_RS17300 0.11 +0.5
26,894 - RS_RS17300 0.11 +0.5
26,899 + RS_RS17300 0.12 -0.8
26,899 + RS_RS17300 0.12 -0.2
26,900 - RS_RS17300 0.12 -0.5
27,016 + RS_RS17300 0.27 +0.6
27,016 + RS_RS17300 0.27 -0.4
27,016 + RS_RS17300 0.27 +0.3
27,017 - RS_RS17300 0.27 -0.7
27,017 - RS_RS17300 0.27 -1.7
27,017 - RS_RS17300 0.27 +0.2
27,068 - RS_RS17300 0.34 -0.3
27,068 - RS_RS17300 0.34 -0.2
27,071 + RS_RS17300 0.34 +0.6
27,071 + RS_RS17300 0.34 +0.8
27,071 + RS_RS17300 0.34 -0.5
27,071 + RS_RS17300 0.34 -0.4
27,071 + RS_RS17300 0.34 -0.2
27,071 + RS_RS17300 0.34 +0.1
27,071 + RS_RS17300 0.34 -0.2
27,071 + RS_RS17300 0.34 -0.1
27,072 - RS_RS17300 0.35 +0.5
27,072 - RS_RS17300 0.35 +0.0
27,072 - RS_RS17300 0.35 -0.2
27,072 - RS_RS17300 0.35 +0.6
27,127 + RS_RS17300 0.42 +0.5
27,127 + RS_RS17300 0.42 -0.2
27,127 + RS_RS17300 0.42 +0.5
27,128 - RS_RS17300 0.42 -0.7
27,128 - RS_RS17300 0.42 -0.8
27,128 - RS_RS17300 0.42 -0.7
27,128 - RS_RS17300 0.42 -1.0
27,128 - RS_RS17300 0.42 +0.3
27,128 - RS_RS17300 0.42 -0.1
27,186 + RS_RS17300 0.49 -0.2
27,187 - RS_RS17300 0.50 +0.6
27,187 - RS_RS17300 0.50 +0.4
27,195 + RS_RS17300 0.51 -0.1
27,195 + RS_RS17300 0.51 -0.1
27,195 + RS_RS17300 0.51 +0.5
27,196 - RS_RS17300 0.51 +0.8
27,196 - RS_RS17300 0.51 +0.1
27,205 + RS_RS17300 0.52 -1.0
27,206 - RS_RS17300 0.52 +0.1
27,206 - RS_RS17300 0.52 -0.3
27,206 - RS_RS17300 0.52 +1.0
27,223 + RS_RS17300 0.54 -0.7
27,223 + RS_RS17300 0.54 -0.5
27,224 - RS_RS17300 0.54 -0.1
27,247 + RS_RS17300 0.57 +0.3
27,289 + RS_RS17300 0.63 -0.4
27,289 + RS_RS17300 0.63 +0.3
27,289 + RS_RS17300 0.63 -0.8
27,289 + RS_RS17300 0.63 +1.7
27,290 - RS_RS17300 0.63 +0.5
27,355 + RS_RS17300 0.72 -0.1
27,355 + RS_RS17300 0.72 -0.1
27,355 + RS_RS17300 0.72 -0.0
27,356 - RS_RS17300 0.72 -1.0
27,405 + RS_RS17300 0.78 +0.3
27,406 - RS_RS17300 0.78 -0.7
27,412 + RS_RS17300 0.79 +0.3
27,412 + RS_RS17300 0.79 +1.4
27,413 - RS_RS17300 0.79 -0.4
27,484 + RS_RS17300 0.89 -0.5
27,484 + RS_RS17300 0.89 -0.3
27,484 + RS_RS17300 0.89 +0.3
27,484 + RS_RS17300 0.89 -0.4
27,485 - RS_RS17300 0.89 -0.6
27,485 - RS_RS17300 0.89 +0.0
27,485 - RS_RS17300 0.89 -0.8
27,485 - RS_RS17300 0.89 -0.7
27,485 - RS_RS17300 0.89 +0.7
27,514 + +0.2
27,521 + -1.0
27,532 + +0.2
27,533 - +0.1
27,631 - -0.2
27,708 + -1.1
27,709 - -0.4
27,709 - +0.1
27,795 + -0.8
27,874 - -0.5
27,978 + RS_RS17305 0.26 -0.2
27,978 + RS_RS17305 0.26 -0.1
27,993 + RS_RS17305 0.29 -1.1
28,029 + RS_RS17305 0.36 +0.9
28,131 + RS_RS17305 0.58 -0.8
28,132 - RS_RS17305 0.58 +0.4
28,132 - RS_RS17305 0.58 +0.5
28,255 + RS_RS17305 0.84 -0.1
28,255 + +1.3
28,369 - -0.0
28,369 - -0.0
28,484 + -0.9
28,484 + +0.3
28,485 - -0.1
28,590 + -0.5
28,590 + +0.3
28,591 - +0.1
28,670 + -0.4
28,690 + -0.8
28,694 + +0.6
28,694 + -0.0
28,694 + -0.2
28,694 + +0.1
28,694 + -0.5
28,694 + +0.0
28,694 + -0.1
28,694 + +0.1
28,694 + +0.2
28,694 + -0.6
28,694 + -0.5
28,695 - -0.4
28,695 - -0.7
28,695 - +0.2
28,695 - +0.4
28,695 - -0.7
28,695 - -0.1
28,695 - +0.2
28,695 - +0.2
28,695 - -0.1
28,698 + +0.3
28,698 + +0.6
29,102 + RS_RS17310 0.60 +0.0
29,103 - RS_RS17310 0.60 +0.2
29,272 + +0.0
29,272 + -0.5
29,272 + -0.3
29,272 + -0.5
29,273 - +0.3
29,318 + +0.3
29,318 + -0.7
29,318 + -0.2
29,318 + -0.2

Or see this region's nucleotide sequence