Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17285 and RS_RS25835 are separated by 201 nucleotides RS_RS25835 and RS_RS17290 are separated by 34 nucleotides RS_RS17290 and RS_RS17295 are separated by 24 nucleotides RS_RS17295 and RS_RS25840 are separated by 874 nucleotides
RS_RS17285: RS_RS17285 - LysR family transcriptional regulator, at 21,974 to 22,843
_RS17285
RS_RS25835: RS_RS25835 - hypothetical protein, at 23,045 to 23,275
_RS25835
RS_RS17290: RS_RS17290 - hypothetical protein, at 23,310 to 23,657
_RS17290
RS_RS17295: RS_RS17295 - chloride channel protein, at 23,682 to 25,067
_RS17295
RS_RS25840: RS_RS25840 - hypothetical protein, at 25,942 to 26,130
_RS25840
Position (kb) 23
24
25
26 Strain fitness (log2 ratio) -2
-1
0
1 at 22.962 kb on + strand at 23.019 kb on + strand at 23.050 kb on + strand at 23.316 kb on + strand at 23.316 kb on + strand at 23.317 kb on - strand at 23.317 kb on - strand at 23.317 kb on - strand at 23.317 kb on - strand at 23.317 kb on - strand at 23.334 kb on + strand at 23.334 kb on + strand at 23.335 kb on - strand at 23.400 kb on + strand, within RS_RS17290 at 23.400 kb on + strand, within RS_RS17290 at 24.012 kb on + strand, within RS_RS17295 at 24.012 kb on + strand, within RS_RS17295 at 24.013 kb on - strand, within RS_RS17295 at 24.013 kb on - strand, within RS_RS17295 at 24.044 kb on - strand, within RS_RS17295 at 24.206 kb on + strand, within RS_RS17295 at 24.206 kb on + strand, within RS_RS17295 at 24.206 kb on + strand, within RS_RS17295 at 24.206 kb on + strand, within RS_RS17295 at 24.207 kb on - strand, within RS_RS17295 at 24.207 kb on - strand, within RS_RS17295 at 24.207 kb on - strand, within RS_RS17295 at 24.397 kb on - strand, within RS_RS17295 at 24.397 kb on - strand at 24.444 kb on + strand, within RS_RS17295 at 24.445 kb on - strand, within RS_RS17295 at 24.445 kb on - strand, within RS_RS17295 at 24.445 kb on - strand, within RS_RS17295 at 24.618 kb on + strand, within RS_RS17295 at 24.618 kb on + strand, within RS_RS17295 at 24.780 kb on + strand, within RS_RS17295 at 24.781 kb on - strand, within RS_RS17295 at 24.781 kb on - strand, within RS_RS17295 at 24.834 kb on + strand, within RS_RS17295 at 24.835 kb on - strand, within RS_RS17295 at 24.924 kb on + strand, within RS_RS17295 at 24.925 kb on - strand, within RS_RS17295 at 24.966 kb on + strand at 25.003 kb on - strand at 25.101 kb on + strand at 25.101 kb on + strand at 25.101 kb on + strand at 25.101 kb on + strand at 25.101 kb on + strand at 25.216 kb on + strand at 25.310 kb on + strand at 25.415 kb on - strand at 25.415 kb on - strand at 25.415 kb on - strand at 25.774 kb on - strand at 25.788 kb on - strand at 25.799 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 22,962 + -0.1 23,019 + +0.2 23,050 + +0.9 23,316 + +0.1 23,316 + -0.2 23,317 - +0.6 23,317 - +0.3 23,317 - -0.2 23,317 - -0.5 23,317 - +0.5 23,334 + -0.5 23,334 + +0.1 23,335 - +0.6 23,400 + RS_RS17290 0.26 -0.8 23,400 + RS_RS17290 0.26 -0.9 24,012 + RS_RS17295 0.24 +0.4 24,012 + RS_RS17295 0.24 +0.3 24,013 - RS_RS17295 0.24 +0.0 24,013 - RS_RS17295 0.24 -0.2 24,044 - RS_RS17295 0.26 +0.6 24,206 + RS_RS17295 0.38 -1.5 24,206 + RS_RS17295 0.38 -0.3 24,206 + RS_RS17295 0.38 -0.0 24,206 + RS_RS17295 0.38 -0.1 24,207 - RS_RS17295 0.38 -0.1 24,207 - RS_RS17295 0.38 -0.2 24,207 - RS_RS17295 0.38 -0.4 24,397 - RS_RS17295 0.52 -0.3 24,397 - -0.7 24,444 + RS_RS17295 0.55 -0.3 24,445 - RS_RS17295 0.55 +0.1 24,445 - RS_RS17295 0.55 -0.4 24,445 - RS_RS17295 0.55 +0.0 24,618 + RS_RS17295 0.68 -2.2 24,618 + RS_RS17295 0.68 +0.4 24,780 + RS_RS17295 0.79 -0.4 24,781 - RS_RS17295 0.79 +0.1 24,781 - RS_RS17295 0.79 +0.1 24,834 + RS_RS17295 0.83 +0.0 24,835 - RS_RS17295 0.83 +0.4 24,924 + RS_RS17295 0.90 +0.4 24,925 - RS_RS17295 0.90 +0.3 24,966 + -0.7 25,003 - +0.7 25,101 + +0.6 25,101 + -0.4 25,101 + +0.1 25,101 + -0.1 25,101 + -0.1 25,216 + +0.2 25,310 + -0.6 25,415 - -1.6 25,415 - +0.2 25,415 - +0.1 25,774 - +1.4 25,788 - +0.5 25,799 - +0.5
Or see this region's nucleotide sequence