Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02040

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02030 and RS_RS02035 are separated by 68 nucleotidesRS_RS02035 and RS_RS02040 are separated by 1 nucleotidesRS_RS02040 and RS_RS02045 are separated by 38 nucleotides RS_RS02030: RS_RS02030 - lipopolysaccharide transport periplasmic protein LptA, at 437,978 to 438,553 _RS02030 RS_RS02035: RS_RS02035 - LPS export ABC transporter periplasmic protein LptC, at 438,622 to 439,254 _RS02035 RS_RS02040: RS_RS02040 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 439,256 to 439,843 _RS02040 RS_RS02045: RS_RS02045 - KpsF/GutQ family sugar-phosphate isomerase, at 439,882 to 440,865 _RS02045 Position (kb) 439 440Strain fitness (log2 ratio) -1 0 1at 438.624 kb on - strandat 439.378 kb on - strand, within RS_RS02040at 439.555 kb on - strand, within RS_RS02040at 439.555 kb on - strand, within RS_RS02040at 439.631 kb on - strand, within RS_RS02040

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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438,624 - -0.2
439,378 - RS_RS02040 0.21 -0.0
439,555 - RS_RS02040 0.51 -1.3
439,555 - RS_RS02040 0.51 +0.0
439,631 - RS_RS02040 0.64 -0.1

Or see this region's nucleotide sequence