Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03581 and CCNA_03582 are separated by 3 nucleotides CCNA_03582 and CCNA_03583 overlap by 4 nucleotides CCNA_03583 and CCNA_03584 are separated by 139 nucleotides CCNA_03584 and CCNA_03585 are separated by 79 nucleotides
CCNA_03581: CCNA_03581 - transporter, drug/metabolite exporter family, at 3,737,998 to 3,738,870
_03581
CCNA_03582: CCNA_03582 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,738,874 to 3,739,671
_03582
CCNA_03583: CCNA_03583 - hypothetical protein, at 3,739,668 to 3,739,859
_03583
CCNA_03584: CCNA_03584 - histidine phosphotransferase ChpT, at 3,739,999 to 3,740,676
_03584
CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133
_03585
Position (kb)
3739
3740 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3738.671 kb on - strand, within CCNA_03581 at 3738.674 kb on - strand, within CCNA_03581 at 3738.686 kb on + strand, within CCNA_03581 at 3738.714 kb on - strand, within CCNA_03581 at 3738.716 kb on + strand at 3738.716 kb on + strand, within CCNA_03581 at 3738.716 kb on + strand, within CCNA_03581 at 3738.716 kb on + strand, within CCNA_03581 at 3738.724 kb on - strand, within CCNA_03581 at 3738.724 kb on - strand, within CCNA_03581 at 3738.724 kb on - strand, within CCNA_03581 at 3738.724 kb on - strand, within CCNA_03581 at 3738.819 kb on - strand at 3738.834 kb on - strand at 3738.854 kb on + strand at 3738.869 kb on + strand at 3738.869 kb on + strand at 3738.870 kb on - strand at 3738.872 kb on + strand at 3738.880 kb on - strand at 3739.630 kb on - strand at 3739.630 kb on - strand at 3739.642 kb on + strand at 3739.666 kb on + strand at 3739.674 kb on - strand at 3739.674 kb on - strand at 3739.753 kb on - strand, within CCNA_03583 at 3739.791 kb on + strand, within CCNA_03583 at 3739.798 kb on - strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.819 kb on - strand, within CCNA_03583 at 3739.824 kb on - strand, within CCNA_03583 at 3739.869 kb on + strand at 3739.950 kb on + strand at 3739.950 kb on + strand at 3739.953 kb on - strand at 3739.958 kb on - strand at 3739.963 kb on - strand at 3739.980 kb on - strand at 3740.699 kb on + strand at 3740.704 kb on + strand at 3740.707 kb on - strand at 3740.753 kb on + strand at 3740.761 kb on - strand at 3740.768 kb on + strand at 3740.768 kb on + strand at 3740.776 kb on - strand at 3740.783 kb on - strand at 3740.836 kb on + strand, within CCNA_03585
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 3,738,671 - CCNA_03581 0.77 -2.7 3,738,674 - CCNA_03581 0.77 -2.3 3,738,686 + CCNA_03581 0.79 +0.0 3,738,714 - CCNA_03581 0.82 -0.3 3,738,716 + +1.4 3,738,716 + CCNA_03581 0.82 +0.2 3,738,716 + CCNA_03581 0.82 +1.0 3,738,716 + CCNA_03581 0.82 -0.3 3,738,724 - CCNA_03581 0.83 -1.7 3,738,724 - CCNA_03581 0.83 -2.7 3,738,724 - CCNA_03581 0.83 -2.0 3,738,724 - CCNA_03581 0.83 -0.2 3,738,819 - -0.7 3,738,834 - +1.0 3,738,854 + +0.0 3,738,869 + +0.1 3,738,869 + +1.2 3,738,870 - -0.7 3,738,872 + -0.7 3,738,880 - +0.7 3,739,630 - -0.6 3,739,630 - +1.4 3,739,642 + +1.4 3,739,666 + -0.1 3,739,674 - +0.8 3,739,674 - -1.9 3,739,753 - CCNA_03583 0.44 -1.9 3,739,791 + CCNA_03583 0.64 -1.2 3,739,798 - CCNA_03583 0.68 -2.3 3,739,811 + CCNA_03583 0.74 +0.1 3,739,811 + CCNA_03583 0.74 -1.4 3,739,811 + CCNA_03583 0.74 +0.4 3,739,811 + CCNA_03583 0.74 -2.5 3,739,819 - CCNA_03583 0.79 +0.5 3,739,824 - CCNA_03583 0.81 -0.7 3,739,869 + -2.5 3,739,950 + -2.5 3,739,950 + -0.4 3,739,953 - -1.4 3,739,958 - +1.0 3,739,963 - -1.0 3,739,980 - -2.6 3,740,699 + +0.9 3,740,704 + +0.4 3,740,707 - -0.5 3,740,753 + +2.1 3,740,761 - +0.1 3,740,768 + -0.0 3,740,768 + +1.2 3,740,776 - -0.0 3,740,783 - -3.1 3,740,836 + CCNA_03585 0.21 +0.3
Or see this region's nucleotide sequence