Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01303 and CCNA_01304 are separated by 228 nucleotides CCNA_01304 and CCNA_01305 are separated by 13 nucleotides CCNA_01305 and CCNA_01306 overlap by 23 nucleotides
CCNA_01303: CCNA_01303 - hypothetical protein, at 1,430,061 to 1,430,900
_01303
CCNA_01304: CCNA_01304 - hypothetical protein, at 1,431,129 to 1,431,329
_01304
CCNA_01305: CCNA_01305 - SSU ribosomal protein S10P, at 1,431,343 to 1,431,651
_01305
CCNA_01306: CCNA_01306 - LSU ribosomal protein L3P, at 1,431,629 to 1,432,432
_01306
Position (kb)
1431
1432 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1430.183 kb on + strand, within CCNA_01303 at 1430.183 kb on + strand, within CCNA_01303 at 1430.192 kb on + strand, within CCNA_01303 at 1430.193 kb on - strand, within CCNA_01303 at 1430.223 kb on + strand, within CCNA_01303 at 1430.276 kb on + strand, within CCNA_01303 at 1430.283 kb on - strand, within CCNA_01303 at 1430.316 kb on + strand, within CCNA_01303 at 1430.324 kb on - strand, within CCNA_01303 at 1430.329 kb on - strand, within CCNA_01303 at 1430.344 kb on - strand, within CCNA_01303 at 1430.349 kb on - strand, within CCNA_01303 at 1430.452 kb on + strand, within CCNA_01303 at 1430.457 kb on + strand, within CCNA_01303 at 1430.500 kb on - strand, within CCNA_01303 at 1430.506 kb on - strand, within CCNA_01303 at 1430.506 kb on - strand, within CCNA_01303 at 1430.529 kb on + strand, within CCNA_01303 at 1430.595 kb on + strand, within CCNA_01303 at 1430.635 kb on - strand, within CCNA_01303 at 1430.654 kb on - strand, within CCNA_01303 at 1430.708 kb on + strand, within CCNA_01303 at 1430.716 kb on - strand, within CCNA_01303 at 1430.716 kb on - strand, within CCNA_01303 at 1430.716 kb on - strand, within CCNA_01303 at 1430.747 kb on - strand, within CCNA_01303 at 1430.789 kb on - strand, within CCNA_01303 at 1430.825 kb on + strand at 1430.864 kb on + strand at 1430.885 kb on - strand at 1430.890 kb on + strand at 1430.900 kb on + strand at 1430.931 kb on + strand at 1430.939 kb on - strand at 1430.953 kb on + strand at 1430.983 kb on - strand at 1431.021 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 1,430,183 + CCNA_01303 0.15 -0.3 1,430,183 + CCNA_01303 0.15 +0.4 1,430,192 + CCNA_01303 0.16 +1.0 1,430,193 - CCNA_01303 0.16 -0.2 1,430,223 + CCNA_01303 0.19 -0.2 1,430,276 + CCNA_01303 0.26 +2.5 1,430,283 - CCNA_01303 0.26 +0.5 1,430,316 + CCNA_01303 0.30 +1.0 1,430,324 - CCNA_01303 0.31 +3.1 1,430,329 - CCNA_01303 0.32 +1.9 1,430,344 - CCNA_01303 0.34 +0.4 1,430,349 - CCNA_01303 0.34 -0.0 1,430,452 + CCNA_01303 0.47 +1.5 1,430,457 + CCNA_01303 0.47 +1.3 1,430,500 - CCNA_01303 0.52 +1.8 1,430,506 - CCNA_01303 0.53 +1.7 1,430,506 - CCNA_01303 0.53 +1.2 1,430,529 + CCNA_01303 0.56 +1.1 1,430,595 + CCNA_01303 0.64 +1.3 1,430,635 - CCNA_01303 0.68 -0.1 1,430,654 - CCNA_01303 0.71 -0.4 1,430,708 + CCNA_01303 0.77 +1.2 1,430,716 - CCNA_01303 0.78 +2.3 1,430,716 - CCNA_01303 0.78 -1.0 1,430,716 - CCNA_01303 0.78 -0.8 1,430,747 - CCNA_01303 0.82 +0.3 1,430,789 - CCNA_01303 0.87 -2.0 1,430,825 + +1.9 1,430,864 + +2.1 1,430,885 - -0.7 1,430,890 + +2.1 1,430,900 + +2.0 1,430,931 + +1.9 1,430,939 - -0.3 1,430,953 + +0.9 1,430,983 - +0.3 1,431,021 + +1.2
Or see this region's nucleotide sequence