Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00796

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00794 and CCNA_00795 are separated by 10 nucleotidesCCNA_00795 and CCNA_00796 overlap by 8 nucleotidesCCNA_00796 and CCNA_03940 are separated by 109 nucleotidesCCNA_03940 and CCNA_00798 are separated by 8 nucleotides CCNA_00794: CCNA_00794 - conserved membrane spanning protein, at 857,776 to 858,969 _00794 CCNA_00795: CCNA_00795 - two-component response regulator FixJ, at 858,980 to 859,588 _00795 CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068 _00796 CCNA_03940: CCNA_03940 - hypothetical protein, at 861,178 to 861,285 _03940 CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892 _00798 Position (kb) 859 860 861 862Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 858.602 kb on - strand, within CCNA_00794at 858.624 kb on - strand, within CCNA_00794at 858.625 kb on + strand, within CCNA_00794at 858.630 kb on + strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.633 kb on - strand, within CCNA_00794at 858.642 kb on + strand, within CCNA_00794at 858.679 kb on + strand, within CCNA_00794at 858.682 kb on - strand, within CCNA_00794at 858.682 kb on - strand, within CCNA_00794at 858.700 kb on + strand, within CCNA_00794at 858.728 kb on + strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.730 kb on + strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.738 kb on - strand, within CCNA_00794at 858.760 kb on + strand, within CCNA_00794at 858.856 kb on - strandat 858.930 kb on + strandat 858.938 kb on - strandat 858.938 kb on - strandat 858.966 kb on - strandat 858.973 kb on + strandat 859.008 kb on - strandat 859.064 kb on + strand, within CCNA_00795at 859.064 kb on + strand, within CCNA_00795at 859.064 kb on + strand, within CCNA_00795at 859.091 kb on - strand, within CCNA_00795at 859.175 kb on - strand, within CCNA_00795at 859.208 kb on - strand, within CCNA_00795at 859.208 kb on - strand, within CCNA_00795at 859.215 kb on + strand, within CCNA_00795at 859.215 kb on + strand, within CCNA_00795at 859.297 kb on - strand, within CCNA_00795at 859.406 kb on + strand, within CCNA_00795at 859.408 kb on + strand, within CCNA_00795at 859.414 kb on - strand, within CCNA_00795at 859.416 kb on - strand, within CCNA_00795at 859.423 kb on + strand, within CCNA_00795at 859.435 kb on - strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.443 kb on + strand, within CCNA_00795at 859.451 kb on - strand, within CCNA_00795at 859.492 kb on - strand, within CCNA_00795at 859.497 kb on + strand, within CCNA_00795at 859.505 kb on - strand, within CCNA_00795at 859.577 kb on + strandat 859.584 kb on + strandat 859.606 kb on - strandat 859.618 kb on - strandat 859.622 kb on - strandat 859.629 kb on - strandat 859.629 kb on - strandat 859.667 kb on + strandat 859.672 kb on + strandat 859.672 kb on + strandat 859.680 kb on - strandat 859.701 kb on - strandat 859.729 kb on + strandat 859.737 kb on - strand, within CCNA_00796at 859.737 kb on - strand, within CCNA_00796at 859.781 kb on - strand, within CCNA_00796at 859.781 kb on - strand, within CCNA_00796at 859.820 kb on + strand, within CCNA_00796at 859.823 kb on - strand, within CCNA_00796at 859.852 kb on - strand, within CCNA_00796at 859.852 kb on - strand, within CCNA_00796at 859.854 kb on + strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.862 kb on - strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.877 kb on + strand, within CCNA_00796at 859.919 kb on - strand, within CCNA_00796at 859.981 kb on - strand, within CCNA_00796at 859.981 kb on - strand, within CCNA_00796at 859.985 kb on + strand, within CCNA_00796at 860.014 kb on - strand, within CCNA_00796at 860.014 kb on - strand, within CCNA_00796at 860.014 kb on - strand, within CCNA_00796at 860.056 kb on - strand, within CCNA_00796at 860.056 kb on - strand, within CCNA_00796at 860.056 kb on - strand, within CCNA_00796at 860.058 kb on + strand, within CCNA_00796at 860.133 kb on + strand, within CCNA_00796at 860.136 kb on - strand, within CCNA_00796at 860.159 kb on - strand, within CCNA_00796at 860.166 kb on + strand, within CCNA_00796at 860.257 kb on - strand, within CCNA_00796at 860.276 kb on - strand, within CCNA_00796at 860.277 kb on - strand, within CCNA_00796at 860.318 kb on - strand, within CCNA_00796at 860.359 kb on - strand, within CCNA_00796at 860.474 kb on - strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796at 860.629 kb on - strand, within CCNA_00796at 860.687 kb on - strand, within CCNA_00796at 860.708 kb on - strand, within CCNA_00796at 860.756 kb on - strand, within CCNA_00796at 860.759 kb on + strand, within CCNA_00796at 860.761 kb on - strand, within CCNA_00796at 860.797 kb on + strand, within CCNA_00796at 860.805 kb on - strand, within CCNA_00796at 860.805 kb on - strand, within CCNA_00796at 860.805 kb on - strand, within CCNA_00796at 860.836 kb on - strand, within CCNA_00796at 860.836 kb on - strand, within CCNA_00796at 860.841 kb on - strand, within CCNA_00796at 860.850 kb on + strand, within CCNA_00796at 860.858 kb on - strand, within CCNA_00796at 860.870 kb on + strand, within CCNA_00796at 860.870 kb on + strand, within CCNA_00796at 860.870 kb on + strand, within CCNA_00796at 860.876 kb on + strand, within CCNA_00796at 860.878 kb on - strand, within CCNA_00796at 860.878 kb on - strand, within CCNA_00796at 860.878 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.904 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.932 kb on - strandat 860.967 kb on - strandat 861.028 kb on + strandat 861.028 kb on + strandat 861.042 kb on + strandat 861.121 kb on - strandat 861.121 kb on - strandat 861.124 kb on + strandat 861.124 kb on + strandat 861.131 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.137 kb on + strandat 861.137 kb on + strandat 861.147 kb on + strandat 861.153 kb on + strandat 861.153 kb on + strandat 861.250 kb on - strand, within CCNA_03940at 861.252 kb on + strand, within CCNA_03940at 861.260 kb on - strand, within CCNA_03940at 861.268 kb on - strand, within CCNA_03940at 861.309 kb on - strandat 861.315 kb on + strandat 861.361 kb on - strandat 861.405 kb on + strandat 861.474 kb on + strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.505 kb on + strand, within CCNA_00798at 861.529 kb on + strand, within CCNA_00798at 861.534 kb on + strand, within CCNA_00798at 861.539 kb on + strand, within CCNA_00798at 861.540 kb on + strand, within CCNA_00798at 861.542 kb on - strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.616 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.764 kb on + strand, within CCNA_00798at 861.764 kb on + strand, within CCNA_00798at 861.788 kb on + strand, within CCNA_00798at 861.796 kb on - strand, within CCNA_00798at 861.796 kb on - strand, within CCNA_00798at 861.825 kb on + strand, within CCNA_00798at 861.840 kb on - strand, within CCNA_00798at 861.841 kb on - strand, within CCNA_00798at 861.866 kb on + strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.889 kb on - strand, within CCNA_00798at 861.889 kb on - strand, within CCNA_00798at 861.889 kb on - strand, within CCNA_00798at 861.891 kb on - strand, within CCNA_00798at 861.891 kb on - strand, within CCNA_00798at 861.891 kb on - strand, within CCNA_00798at 861.919 kb on + strand, within CCNA_00798at 861.919 kb on + strand, within CCNA_00798at 861.919 kb on + strand, within CCNA_00798at 861.927 kb on - strand, within CCNA_00798at 861.941 kb on - strand, within CCNA_00798at 861.945 kb on + strand, within CCNA_00798at 861.945 kb on + strand, within CCNA_00798at 861.951 kb on - strand, within CCNA_00798at 861.953 kb on - strand, within CCNA_00798at 862.013 kb on + strand, within CCNA_00798at 862.013 kb on - strand, within CCNA_00798at 862.058 kb on - strand, within CCNA_00798

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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858,602 - CCNA_00794 0.69 -0.7
858,624 - CCNA_00794 0.71 +2.7
858,625 + CCNA_00794 0.71 -0.3
858,630 + CCNA_00794 0.72 -1.5
858,633 - CCNA_00794 0.72 -1.1
858,633 - CCNA_00794 0.72 -0.8
858,633 - CCNA_00794 0.72 -2.9
858,633 - CCNA_00794 0.72 -0.2
858,642 + CCNA_00794 0.73 -1.1
858,679 + CCNA_00794 0.76 -0.7
858,682 - CCNA_00794 0.76 -0.3
858,682 - CCNA_00794 0.76 -0.8
858,700 + CCNA_00794 0.77 +2.9
858,728 + CCNA_00794 0.80 -0.6
858,730 + CCNA_00794 0.80 -0.2
858,730 + CCNA_00794 0.80 -1.4
858,738 - CCNA_00794 0.81 -2.6
858,738 - CCNA_00794 0.81 +1.1
858,738 - CCNA_00794 0.81 -0.7
858,760 + CCNA_00794 0.82 -0.6
858,856 - -0.1
858,930 + -0.5
858,938 - +1.0
858,938 - +0.3
858,966 - +0.8
858,973 + -0.1
859,008 - +0.9
859,064 + CCNA_00795 0.14 -2.4
859,064 + CCNA_00795 0.14 -2.1
859,064 + CCNA_00795 0.14 -1.6
859,091 - CCNA_00795 0.18 -2.0
859,175 - CCNA_00795 0.32 -2.2
859,208 - CCNA_00795 0.37 -0.6
859,208 - CCNA_00795 0.37 -3.3
859,215 + CCNA_00795 0.39 -2.3
859,215 + CCNA_00795 0.39 -1.4
859,297 - CCNA_00795 0.52 -0.6
859,406 + CCNA_00795 0.70 -1.4
859,408 + CCNA_00795 0.70 -2.3
859,414 - CCNA_00795 0.71 -3.1
859,416 - CCNA_00795 0.72 -1.3
859,423 + CCNA_00795 0.73 -1.6
859,435 - CCNA_00795 0.75 -2.2
859,443 + CCNA_00795 0.76 -2.7
859,443 + CCNA_00795 0.76 -1.6
859,451 - CCNA_00795 0.77 -2.8
859,492 - CCNA_00795 0.84 -2.2
859,497 + CCNA_00795 0.85 -0.8
859,505 - CCNA_00795 0.86 -1.0
859,577 + -1.3
859,584 + -0.8
859,606 - +1.1
859,618 - -0.7
859,622 - +0.9
859,629 - +1.1
859,629 - +1.4
859,667 + -2.0
859,672 + +1.7
859,672 + -3.1
859,680 - -1.8
859,701 - -2.4
859,729 + -3.4
859,737 - CCNA_00796 0.10 -2.2
859,737 - CCNA_00796 0.10 -2.3
859,781 - CCNA_00796 0.13 -3.3
859,781 - CCNA_00796 0.13 -3.4
859,820 + CCNA_00796 0.16 -1.4
859,823 - CCNA_00796 0.16 -1.1
859,852 - CCNA_00796 0.18 +0.7
859,852 - CCNA_00796 0.18 -0.3
859,854 + CCNA_00796 0.18 -3.3
859,862 - CCNA_00796 0.19 -0.3
859,862 - CCNA_00796 0.19 -1.4
859,862 - CCNA_00796 0.19 -2.3
859,877 + CCNA_00796 0.20 -2.0
859,877 + CCNA_00796 0.20 -1.4
859,877 + CCNA_00796 0.20 -2.0
859,919 - CCNA_00796 0.23 -3.6
859,981 - CCNA_00796 0.27 -3.0
859,981 - CCNA_00796 0.27 -1.1
859,985 + CCNA_00796 0.27 -1.9
860,014 - CCNA_00796 0.29 -2.0
860,014 - CCNA_00796 0.29 -3.1
860,014 - CCNA_00796 0.29 -2.0
860,056 - CCNA_00796 0.32 -1.9
860,056 - CCNA_00796 0.32 -1.5
860,056 - CCNA_00796 0.32 -2.4
860,058 + CCNA_00796 0.32 -2.1
860,133 + CCNA_00796 0.37 -0.3
860,136 - CCNA_00796 0.37 -0.9
860,159 - CCNA_00796 0.39 +0.3
860,166 + CCNA_00796 0.39 -2.5
860,257 - CCNA_00796 0.45 -1.4
860,276 - CCNA_00796 0.47 -2.0
860,277 - CCNA_00796 0.47 -1.9
860,318 - CCNA_00796 0.50 -1.9
860,359 - CCNA_00796 0.52 -2.6
860,474 - CCNA_00796 0.60 -3.6
860,490 + CCNA_00796 0.61 -3.8
860,490 + CCNA_00796 0.61 -2.8
860,629 - CCNA_00796 0.70 -1.3
860,687 - CCNA_00796 0.74 -2.1
860,708 - CCNA_00796 0.76 -0.9
860,756 - CCNA_00796 0.79 -2.0
860,759 + CCNA_00796 0.79 -3.1
860,761 - CCNA_00796 0.79 -1.1
860,797 + CCNA_00796 0.82 -2.1
860,805 - CCNA_00796 0.82 -2.6
860,805 - CCNA_00796 0.82 -2.2
860,805 - CCNA_00796 0.82 -3.5
860,836 - CCNA_00796 0.84 -2.1
860,836 - CCNA_00796 0.84 -1.1
860,841 - CCNA_00796 0.85 -1.4
860,850 + CCNA_00796 0.85 -1.7
860,858 - CCNA_00796 0.86 -2.1
860,870 + CCNA_00796 0.87 -2.1
860,870 + CCNA_00796 0.87 -1.4
860,870 + CCNA_00796 0.87 -2.2
860,876 + CCNA_00796 0.87 -1.4
860,878 - CCNA_00796 0.87 -3.4
860,878 - CCNA_00796 0.87 -0.9
860,878 - CCNA_00796 0.87 -1.1
860,894 - CCNA_00796 0.88 -2.3
860,901 + CCNA_00796 0.89 -2.4
860,901 + CCNA_00796 0.89 -2.8
860,904 - CCNA_00796 0.89 -0.3
860,909 - CCNA_00796 0.89 -1.4
860,909 - CCNA_00796 0.89 -0.4
860,932 - -1.3
860,967 - -3.1
861,028 + -2.1
861,028 + -1.0
861,042 + -1.0
861,121 - +1.4
861,121 - +1.0
861,124 + -0.2
861,124 + +1.4
861,131 - -0.4
861,132 - +1.7
861,132 - -0.5
861,132 - +0.8
861,132 - +0.5
861,132 - -0.2
861,137 + +2.7
861,137 + +0.5
861,147 + -0.5
861,153 + +0.7
861,153 + +1.1
861,250 - CCNA_03940 0.67 +0.7
861,252 + CCNA_03940 0.69 +1.3
861,260 - CCNA_03940 0.76 -0.0
861,268 - CCNA_03940 0.83 +2.1
861,309 - -2.0
861,315 + +3.4
861,361 - +0.1
861,405 + -1.4
861,474 + CCNA_00798 0.11 -1.9
861,482 - CCNA_00798 0.12 -0.6
861,482 - CCNA_00798 0.12 -2.4
861,482 - CCNA_00798 0.12 -2.6
861,505 + CCNA_00798 0.13 -1.3
861,529 + CCNA_00798 0.15 -1.6
861,534 + CCNA_00798 0.15 +0.1
861,539 + CCNA_00798 0.15 -2.4
861,540 + CCNA_00798 0.15 -1.7
861,542 - CCNA_00798 0.16 -0.9
861,602 - CCNA_00798 0.19 -1.7
861,602 - CCNA_00798 0.19 -2.5
861,602 - CCNA_00798 0.19 -2.0
861,616 + CCNA_00798 0.20 -0.7
861,655 + CCNA_00798 0.23 -0.3
861,655 + CCNA_00798 0.23 -2.5
861,655 + CCNA_00798 0.23 -2.7
861,663 - CCNA_00798 0.23 -2.1
861,764 + CCNA_00798 0.29 -2.4
861,764 + CCNA_00798 0.29 -1.1
861,788 + CCNA_00798 0.31 -1.9
861,796 - CCNA_00798 0.31 -1.6
861,796 - CCNA_00798 0.31 -2.6
861,825 + CCNA_00798 0.33 -2.9
861,840 - CCNA_00798 0.34 -3.2
861,841 - CCNA_00798 0.34 -1.7
861,866 + CCNA_00798 0.36 -1.1
861,874 - CCNA_00798 0.36 -2.7
861,874 - CCNA_00798 0.36 -1.6
861,874 - CCNA_00798 0.36 -3.9
861,889 - CCNA_00798 0.37 -1.1
861,889 - CCNA_00798 0.37 -1.4
861,889 - CCNA_00798 0.37 -1.1
861,891 - CCNA_00798 0.37 +0.1
861,891 - CCNA_00798 0.37 -0.6
861,891 - CCNA_00798 0.37 -1.5
861,919 + CCNA_00798 0.39 -2.3
861,919 + CCNA_00798 0.39 +0.4
861,919 + CCNA_00798 0.39 -0.6
861,927 - CCNA_00798 0.40 +0.7
861,941 - CCNA_00798 0.40 -2.8
861,945 + CCNA_00798 0.41 -2.1
861,945 + CCNA_00798 0.41 -1.3
861,951 - CCNA_00798 0.41 +0.9
861,953 - CCNA_00798 0.41 -2.2
862,013 + CCNA_00798 0.45 -0.6
862,013 - CCNA_00798 0.45 -2.2
862,058 - CCNA_00798 0.48 -1.7

Or see this region's nucleotide sequence