Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12700

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
3,165,337	+				-0.4
3,165,390	+		CA265_RS12695	0.16	-0.7
3,165,393	-		CA265_RS12695	0.17	-1.0
3,165,397	-		CA265_RS12695	0.17	-0.6
3,165,478	-		CA265_RS12695	0.31	+0.8
3,165,511	+		CA265_RS12695	0.36	-0.6
3,165,588	+		CA265_RS12695	0.49	-0.3
3,165,589	-		CA265_RS12695	0.49	-0.5
3,165,624	+		CA265_RS12695	0.55	-2.4
3,165,658	-		CA265_RS12695	0.61	-0.1
3,165,658	-		CA265_RS12695	0.61	-1.8
3,165,714	+		CA265_RS12695	0.70	+0.3
3,165,714	+		CA265_RS12695	0.70	+0.5
3,165,714	+		CA265_RS12695	0.70	-0.7
3,165,714	+		CA265_RS12695	0.70	-0.0
3,165,714	+		CA265_RS12695	0.70	+0.4
3,165,736	+		CA265_RS12695	0.74	+0.7
3,165,769	-		CA265_RS12695	0.79	-0.4
3,165,771	+		CA265_RS12695	0.79	-2.6
3,165,771	+		CA265_RS12695	0.79	-0.7
3,165,807	+		CA265_RS12695	0.85	+0.7
3,165,849	+				+0.0
3,165,850	-				-1.7
3,165,916	+				+0.4
3,165,917	-				+0.0
3,165,953	+				-0.7
3,165,988	+				-1.0
3,165,988	+				-0.3
3,165,991	+				-0.8
3,166,032	+				+0.3
3,166,102	-				-0.1
3,166,142	-				+0.7
3,166,156	+				-0.0
3,166,156	+				-0.1
3,166,161	+				+0.1
3,166,162	-				+0.2
3,166,197	-				+0.4
3,166,203	+				+1.7
3,166,203	+				+0.2
3,166,242	+				-1.0
3,166,297	+				-0.4
3,166,297	+				+0.3
3,166,358	+				-0.3
3,166,378	-				+1.1
3,166,403	-		CA265_RS12700	0.12	-1.2
3,166,553	+		CA265_RS12700	0.30	+0.0
3,166,585	+		CA265_RS12700	0.34	-1.3
3,166,585	+		CA265_RS12700	0.34	-0.7
3,166,585	+		CA265_RS12700	0.34	+0.5
3,166,585	+		CA265_RS12700	0.34	-0.5
3,166,585	+		CA265_RS12700	0.34	+0.1
3,166,585	+		CA265_RS12700	0.34	+0.1
3,166,586	-		CA265_RS12700	0.34	+0.2
3,166,586	-		CA265_RS12700	0.34	-1.0
3,166,586	-		CA265_RS12700	0.34	-0.7
3,166,630	-		CA265_RS12700	0.39	-0.6
3,166,630	-		CA265_RS12700	0.39	-0.4
3,166,634	-		CA265_RS12700	0.39	-0.3
3,166,634	-		CA265_RS12700	0.39	-0.5
3,166,645	-		CA265_RS12700	0.41	-0.1
3,166,663	-		CA265_RS12700	0.43	+0.3
3,166,687	-		CA265_RS12700	0.46	+0.9
3,166,742	+		CA265_RS12700	0.52	-1.6
3,166,743	-		CA265_RS12700	0.52	-0.8
3,166,755	+		CA265_RS12700	0.54	-0.1
3,166,797	+		CA265_RS12700	0.59	+0.2
3,166,797	+		CA265_RS12700	0.59	+0.3
3,166,797	+		CA265_RS12700	0.59	-0.7
3,166,798	-		CA265_RS12700	0.59	+1.3
3,166,801	+		CA265_RS12700	0.59	-0.2
3,166,801	+		CA265_RS12700	0.59	+0.2
3,166,801	+		CA265_RS12700	0.59	-0.1
3,166,816	+		CA265_RS12700	0.61	-0.8
3,166,833	+		CA265_RS12700	0.63	-0.1
3,166,839	+		CA265_RS12700	0.64	+0.1
3,166,959	-		CA265_RS12700	0.78	+0.4
3,166,985	+		CA265_RS12700	0.81	+1.0
3,167,024	-		CA265_RS12700	0.86	-0.3
3,167,077	+				+0.3
3,167,077	+				-0.5
3,167,078	-				+0.3
3,167,078	-				-2.2
3,167,079	+				-0.4
3,167,080	-				+0.1
3,167,124	+				+0.3
3,167,177	+				-0.7
3,167,180	+				-1.1
3,167,181	-				-0.1
3,167,187	-				+0.4
3,167,211	-				-0.5
3,167,256	+				+0.1
3,167,256	+				-0.6
3,167,258	+				+0.0
3,167,258	+				-1.6
3,167,355	+				-0.8
3,167,363	+				-0.6
3,167,363	+				-0.2
3,167,380	-				+0.9
3,167,463	+				+0.8
3,167,530	+		CA265_RS12705	0.12	+0.6
3,167,531	-		CA265_RS12705	0.12	-0.1
3,167,536	-		CA265_RS12705	0.12	-1.3
3,167,598	+		CA265_RS12705	0.22	-0.3
3,167,619	+		CA265_RS12705	0.25	+0.6
3,167,626	+		CA265_RS12705	0.26	+0.4
3,167,676	+		CA265_RS12705	0.33	-0.2
3,167,755	+		CA265_RS12705	0.45	+1.2
3,167,797	+		CA265_RS12705	0.51	+1.0
3,167,798	-		CA265_RS12705	0.51	-1.2
3,167,836	+		CA265_RS12705	0.57	+0.6
3,167,869	-		CA265_RS12705	0.62	-1.0
3,167,895	+		CA265_RS12705	0.66	-0.3
3,168,027	+		CA265_RS12705	0.86	-0.2
3,168,108	+				+0.4
3,168,125	+				+0.9
3,168,127	+				-1.7
3,168,139	-				+0.3