Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11650

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
2,888,336	-				+1.1
2,888,341	+				+0.5
2,888,357	+				+0.1
2,888,358	-				+0.2
2,888,409	-		CA265_RS11650	0.15	+0.5
2,888,574	+		CA265_RS11650	0.42	-0.0
2,888,575	-		CA265_RS11650	0.43	+1.1
2,888,575	-		CA265_RS11650	0.43	-0.6
2,888,577	+		CA265_RS11650	0.43	+0.3
2,888,580	-		CA265_RS11650	0.43	+0.3
2,888,580	-		CA265_RS11650	0.43	-0.5
2,888,583	+		CA265_RS11650	0.44	-0.1
2,888,583	+		CA265_RS11650	0.44	+0.3
2,888,583	+		CA265_RS11650	0.44	+0.1
2,888,583	+		CA265_RS11650	0.44	-0.3
2,888,584	-		CA265_RS11650	0.44	+0.0
2,888,594	-		CA265_RS11650	0.46	-0.2
2,888,736	+		CA265_RS11650	0.69	-1.4
2,888,736	+		CA265_RS11650	0.69	+0.3
2,888,765	-		CA265_RS11650	0.74	-1.4
2,888,799	+		CA265_RS11650	0.79	-0.3
2,888,799	+		CA265_RS11650	0.79	+0.1
2,888,800	-		CA265_RS11650	0.79	-0.4
2,888,895	+				+0.4
2,888,895	+				+0.1
2,888,897	+				+0.8
2,888,897	+				-0.6
2,888,898	-				+0.4
2,888,898	-				-0.6
2,888,898	-				+0.5
2,888,955	+				+0.8
2,888,969	+				-1.0
2,888,972	-				-0.1
2,888,972	-				-2.0
2,888,972	-				+0.7
2,888,993	+				+0.4
2,889,006	+				-0.1
2,889,012	+				-1.1
2,889,012	+				+0.1
2,889,023	+				-0.5
2,889,027	+				-1.6
2,889,036	+				-0.6
2,889,036	+				-0.3
2,889,136	+		CA265_RS11655	0.11	+0.5
2,889,136	+		CA265_RS11655	0.11	-0.5
2,889,137	-		CA265_RS11655	0.12	+0.1
2,889,140	-		CA265_RS11655	0.12	-0.1
2,889,140	-		CA265_RS11655	0.12	-0.0
2,889,199	+		CA265_RS11655	0.20	+0.5
2,889,200	-		CA265_RS11655	0.20	-0.4
2,889,220	+		CA265_RS11655	0.23	+0.1
2,889,220	+		CA265_RS11655	0.23	-0.1
2,889,273	+		CA265_RS11655	0.30	+0.0
2,889,273	+		CA265_RS11655	0.30	+0.2
2,889,274	-		CA265_RS11655	0.30	-0.1
2,889,295	+		CA265_RS11655	0.33	-0.3
2,889,302	+		CA265_RS11655	0.33	-0.3
2,889,379	+		CA265_RS11655	0.44	-0.0
2,889,500	-		CA265_RS11655	0.60	-1.1
2,889,653	+		CA265_RS11655	0.80	+0.8
2,889,656	-		CA265_RS11655	0.80	-0.3
2,889,656	-		CA265_RS11655	0.80	-0.0
2,889,662	-		CA265_RS11655	0.81	+0.3
2,889,668	-		CA265_RS11655	0.82	-0.4
2,889,679	-		CA265_RS11655	0.84	-0.5
2,889,706	-		CA265_RS11655	0.87	-0.3
2,889,731	-				-0.6
2,889,848	+				+0.1
2,889,876	+				-0.7
2,889,881	+				-0.1