Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06575

Experiment: R2A with Tetracycline 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Tetracycline 0.0005 mg/ml
1,624,469	-		CA265_RS06570	0.41	-0.6
1,624,488	-		CA265_RS06570	0.42	-0.4
1,624,522	-		CA265_RS06570	0.45	+0.7
1,624,522	-		CA265_RS06570	0.45	-0.2
1,624,569	-		CA265_RS06570	0.48	+0.3
1,624,581	+		CA265_RS06570	0.49	+0.4
1,624,595	+		CA265_RS06570	0.50	-0.2
1,624,595	+		CA265_RS06570	0.50	-0.8
1,624,596	-				+0.7
1,624,604	+		CA265_RS06570	0.50	-0.5
1,624,635	+		CA265_RS06570	0.52	+1.6
1,624,636	-		CA265_RS06570	0.52	-0.5
1,624,637	+		CA265_RS06570	0.52	+0.3
1,624,637	+		CA265_RS06570	0.52	+0.5
1,624,638	-		CA265_RS06570	0.53	-0.4
1,624,666	+		CA265_RS06570	0.54	-0.2
1,624,823	+		CA265_RS06570	0.65	+0.3
1,624,838	+		CA265_RS06570	0.66	+0.4
1,624,839	-		CA265_RS06570	0.66	-1.3
1,624,886	+		CA265_RS06570	0.69	-0.2
1,624,886	+		CA265_RS06570	0.69	+0.9
1,624,984	-		CA265_RS06570	0.76	-1.7
1,624,995	+		CA265_RS06570	0.77	-0.8
1,625,003	-		CA265_RS06570	0.77	-1.0
1,625,007	-		CA265_RS06570	0.77	-0.5
1,625,033	-		CA265_RS06570	0.79	+0.7
1,625,113	-		CA265_RS06570	0.85	-0.3
1,625,122	-		CA265_RS06570	0.85	-0.4
1,625,160	-		CA265_RS06570	0.88	-0.3
1,625,260	+				-0.5
1,625,270	-				+1.4
1,625,295	+				-1.2
1,625,346	-				+0.6
1,625,401	-				+0.9
1,625,522	-				+0.6
1,625,628	-		CA265_RS06575	0.14	+0.6
1,625,628	-		CA265_RS06575	0.14	+0.6
1,625,628	-		CA265_RS06575	0.14	-0.2
1,625,681	+		CA265_RS06575	0.17	+0.8
1,625,682	-		CA265_RS06575	0.17	-1.7
1,625,682	-		CA265_RS06575	0.17	-0.3
1,625,790	-		CA265_RS06575	0.24	-0.5
1,625,836	-		CA265_RS06575	0.26	+1.3
1,625,836	-		CA265_RS06575	0.26	-1.8
1,625,836	-		CA265_RS06575	0.26	+0.5
1,625,839	+		CA265_RS06575	0.27	+0.1
1,625,840	-		CA265_RS06575	0.27	-0.8
1,625,842	-		CA265_RS06575	0.27	+0.4
1,625,948	-		CA265_RS06575	0.33	-1.1
1,625,976	-		CA265_RS06575	0.35	-0.0
1,626,000	-		CA265_RS06575	0.36	-0.4
1,626,056	+		CA265_RS06575	0.40	+0.8
1,626,146	+		CA265_RS06575	0.45	-1.7
1,626,174	-		CA265_RS06575	0.47	+1.2
1,626,199	+		CA265_RS06575	0.49	+0.9
1,626,200	-		CA265_RS06575	0.49	+1.0
1,626,203	+		CA265_RS06575	0.49	+0.1
1,626,421	-		CA265_RS06575	0.62	+0.3
1,626,433	-		CA265_RS06575	0.63	-0.4
1,626,455	+		CA265_RS06575	0.64	+0.3
1,626,468	-		CA265_RS06575	0.65	-1.5
1,626,566	-		CA265_RS06575	0.71	+0.2
1,626,586	-		CA265_RS06575	0.72	-0.4
1,626,677	-		CA265_RS06575	0.78	+0.4
1,626,677	-		CA265_RS06575	0.78	+0.7
1,626,732	-		CA265_RS06575	0.81	+0.9
1,626,868	-		CA265_RS06575	0.89	+0.1
1,626,872	-		CA265_RS06575	0.90	-0.1
1,626,906	-				-1.4
1,626,950	+				+1.2
1,626,954	+				+1.1
1,626,955	-				+1.9
1,626,993	+				+0.1
1,626,994	-				-0.1
1,626,994	-				-0.1
1,626,994	-				-0.7
1,626,994	-				-0.2
1,626,994	-				-0.4
1,627,110	+				+1.1
1,627,205	+				+0.4
1,627,205	+				+1.1
1,627,206	-				-0.9
1,627,206	-				-0.5
1,627,216	+				-1.2
1,627,258	-		CA265_RS06580	0.10	+1.2
1,627,346	-		CA265_RS06580	0.16	-1.6
1,627,364	-		CA265_RS06580	0.17	+0.1
1,627,370	+		CA265_RS06580	0.17	+0.8
1,627,397	-		CA265_RS06580	0.19	+0.4
1,627,397	-		CA265_RS06580	0.19	-0.8
1,627,424	+		CA265_RS06580	0.20	+1.0
1,627,425	-		CA265_RS06580	0.20	-0.3
1,627,425	-		CA265_RS06580	0.20	+0.1
1,627,427	-		CA265_RS06580	0.20	-0.5
1,627,543	+		CA265_RS06580	0.27	-0.4
1,627,544	-		CA265_RS06580	0.27	-1.7
1,627,727	-		CA265_RS06580	0.39	-0.0
1,627,732	+		CA265_RS06580	0.39	+0.7
1,627,749	-		CA265_RS06580	0.40	-0.1
1,627,766	-		CA265_RS06580	0.41	-0.2
1,627,891	+		CA265_RS06580	0.48	+0.6
1,627,891	+		CA265_RS06580	0.48	-0.7
1,627,898	-		CA265_RS06580	0.49	+0.3
1,627,902	+		CA265_RS06580	0.49	+0.9
1,627,902	+		CA265_RS06580	0.49	-0.6
1,627,917	+		CA265_RS06580	0.50	-1.9
1,627,962	-		CA265_RS06580	0.53	+0.6
1,627,991	-		CA265_RS06580	0.54	-0.6
1,627,993	-		CA265_RS06580	0.55	-0.0